Basic Information
Locus ID:
Ag5G02408
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Fumarylacetoacetate (FAA) hydrolase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 292689410 | 292698199 | - | Ag5G02408 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 24,099.57 Da | 29.11 | 98.85 | -0.02 |
Protein Domain:
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15940.1 | Fumarylacetoacetate (FAA) hydrolase family. | 0 |
| RefSeq | XP_017219393.1 | PREDICTED: acylpyruvase FAHD1, mitochondrial-like [Daucus carota subsp. sativus] | 0 |
| Q93ZE5 | Oxaloacetate tautomerase FAHD1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=FAHD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161ZHC1 | FAA_hydrolase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023296 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 36.697895 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 40.722492 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 24.922707 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 25.139908 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 27.651777 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 30.06764 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 28.39674 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 23.325359 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 19.429253 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 17.287563 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.856937 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 23.288439 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 25.002932 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 26.025055 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 18.004135 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 15.422046 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 13.009695 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.828556 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.38449 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 31.655388 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 38.084167 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 25.406103 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 30.382908 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 22.419695 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 21.845636 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.196684 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 18.880636 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 16.464764 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 20.109749 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 14.686865 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 11.771316 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 11.478674 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 43.281075 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 38.481144 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 46.425232 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 49.956421 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 31.265732 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 41.487671 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 15.112777 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 27.056671 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 18.089321 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 64.568794 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 72.398903 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 72.419037 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 67.091026 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 75.989395 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 55.39967 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 23.147181 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 22.748955 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 24.410475 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11243, jg32391, jg5660 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18887 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah021214, Ah028636 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg1915, Sbi_jg34609, Sbi_jg59953, Sbi_jg62895 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg23966, Seu_jg2852 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011677, GOSA_00025792 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl03307, Sgl08379, Sgl73533, Sgl77062 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000006871, gene:ENSEOMG00000012550 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0016830, CQ.Regalona.r1.3AG0016840 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30234110 |
| Apiaceae | Apium graveolens | 2 | Ag5G02408, Ag8G01726 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G002590 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103721684, gene-LOC120103806 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.1185.V1.1, AsparagusV1_Unassigned.1098.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G26877 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G16700.1, AT4G15940.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10021471m.g.v1.0, Thhalv10026185m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g14970.v2.2, Sp7g14390.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB07g021530.2N, BniB07g021540.2N, BniB07g021550.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1114 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1210 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g17590 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0009s00002.v1.0, Dusal.0063s00017.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g30940, gene.Thate06g04270 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1279 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00703 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.476, BH01.263, CH01.101 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0254710 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0342690.1, HORVU.MOREX.r3.5HG0528510.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_060485, gene-QYE76_063752 |
| Poaceae | Oryza coarctata | 3 | Oco05G027950, Oco05G028150, Oco06G028920 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g30800.1, LOC_Os03g61330.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G022000, gene-BS78_01G022100 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0104325, Pt_Chr0104336, Pt_Chr0105979, Pt_Chr0108198 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G000980, Chr04G031990, Chr07G030980, Chr12G032610 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G127700, Tel5E01G782400 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG037280, gene_TRIDC4AG054620 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G236400.1, TraesCS4A02G366200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb053490_P001, Zm00001eb063500_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15574, nbis-gene-16661 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g114, Zma_g2437 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.951, evm.TU.LG21.613 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g31860 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.583 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-1365, nbisL1-mrna-16106 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15875, nbisL1-mrna-2712 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-478, nbisL1-mrna-6305 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.334, evm.TU.utg000019l.852 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00006982, Maker00012518 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12190, nbisL1-mrna-13743 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3659 |
| Salicaceae | Populus euphratica | 1 | populus_peu22247 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626770 |
| Solanaceae | Solanum chilense | 1 | SOLCI000865800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009288 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9439 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1664 |
| Zosteraceae | Zostera marina | 1 | Zosma01g00290.v3.1 |