halophFGD

Basic Information

Locus ID: Ag5G02369

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: PHD finger protein MALE

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	290766696	290767354	+	Ag5G02369

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.04	21,723.86 Da	28.48	93.33	-0.15

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

Best hit

Source	Best Hit ID	Description
TAIR	AT1G66170.1	RING/FYVE/PHD zinc finger superfamily protein. encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus.
RefSeq	XP_017245257.1	PREDICTED: PHD finger protein MALE MEIOCYTE DEATH 1 [Daucus carota subsp. sativus]
Swiss-Prot	Q7X6Y7	PHD finger protein MALE MEIOCYTE DEATH 1 OS=Arabidopsis thaliana OX=3702 GN=MMD1 PE=1 SV=1
TrEMBL	A0A6L5BAS9	PHD domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_005160 PE=4 SV=1

Expression

BioProject	Accession	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg17106, jg39381, jg5094, jg5114
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10339, gene_11906, gene_21026
Amaranthaceae	Atriplex hortensis	3	Ah005533, Ah005563, Ah037349
Amaranthaceae	Beta vulgaris	4	BVRB_2g029070, BVRB_4g077670, BVRB_4g077930, BVRB_9g208740
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg17324, Sbi_jg17339, Sbi_jg41716, Sbi_jg48393 ... Sbi_jg61959, Sbi_jg61977
Amaranthaceae	Salicornia europaea	3	Seu_jg27705, Seu_jg582, Seu_jg599
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00015483, GOSA_00015496, GOSA_00023272
Amaranthaceae	Suaeda glauca	6	Sgl24336, Sgl24351, Sgl29509, Sgl29522, Sgl79140, Sgl81593
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000008347, gene:ENSEOMG00000011790 ... gene:ENSEOMG00000028921, gene:ENSEOMG00000029137, gene:ENSEOMG00000037317, gene:ENSEOMG00000040377
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.4AG0006330, CQ.Regalona.r1.4AG0006520 ... CQ.Regalona.r1.4BG0006470, CQ.Regalona.r1.4BG0006640, CQ.Regalona.r1.9AG0007390, CQ.Regalona.r1.9BG0015440
Anacardiaceae	Pistacia vera	4	pistato.v30129370, pistato.v30189110, pistato.v30203010 ... pistato.v30219200
Apiaceae	Apium graveolens	7	Ag1G02102, Ag2G01050, Ag3G00463, Ag3G01627, Ag5G02369 ... Ag8G01906, AgUnG00407
Arecaceae	Cocos nucifera	5	COCNU_01G021260, COCNU_03G009600, COCNU_11G004580 ... COCNU_15G003710, scaffold008086G000010
Arecaceae	Phoenix dactylifera	6	gene-LOC103697708, gene-LOC103704801, gene-LOC103716627 ... gene-LOC103717257, gene-LOC103719266, gene-LOC113462577
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.1632.V1.1, AsparagusV1_06.1557.V1.1 ... AsparagusV1_09.322.V1.1, AsparagusV1_10.1197.V1.1, AsparagusV1_10.1269.V1.1
Asteraceae	Flaveria trinervia	5	Ftri14G32746, Ftri18G09353, Ftri7G19411, Ftri9G06884 ... Ftri9G19262
Brassicaceae	Arabidopsis thaliana	4	AT1G33420.1, AT1G66170.1, AT2G01810.1, AT5G22260.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10003728m.g.v1.0, Thhalv10006958m.g.v1.0 ... Thhalv10012892m.g.v1.0, Thhalv10018197m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g28880.v2.2, Sp2g13240.v2.2, Sp5g21230.v2.2 ... Sp6g22980.v2.2
Brassicaceae	Brassica nigra	7	BniB02g041360.2N, BniB02g065060.2N, BniB03g035960.2N ... BniB04g009420.2N, BniB04g009430.2N, BniB05g062000.2N, BniB05g062030.2N
Casuarinaceae	Casuarina equisetifolia	9	Ceq01G0471, Ceq01G0474, Ceq02G1634, Ceq03G2143, Ceq03G2877 ... Ceq06G2146, Ceq06G2171, Ceq08G0610, Ceq09G0821
Casuarinaceae	Casuarina glauca	7	Cgl01G0502, Cgl02G1694, Cgl03G3026, Cgl06G2260, Cgl06G2286 ... Cgl08G0578, Cgl09G0876
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno04g10550, gene.Cymno07g09340, gene.Cymno08g04180 ... gene.Cymno09g01450
Dunaliellaceae	Dunaliella salina	1	Dusal.0415s00011.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate05g24720, gene.Thate06g07750, gene.Thate06g09270 ... gene.Thate06g09290
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-10228
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG02.2523, evm.TU.LG02.57, evm.TU.LG03.1133
Plantaginaceae	Plantago ovata	6	Pov_00020774, Pov_00021166, Pov_00026880, Pov_00026894 ... Pov_00039055, Pov_00039056
Plumbaginaceae	Limonium bicolor	5	Lb1G01572, Lb1G01576, Lb1G06425, Lb1G06432, Lb5G28245
Poaceae	Echinochloa crus-galli	12	AH01.816, AH02.4062, AH03.2122, AH04.872, BH01.960, BH04.837 ... BH02.4072, BH03.2289, CH01.1002, CH02.4102, CH03.2440, CH04.847
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_1AG0041880, gene-QOZ80_1BG0091780 ... gene-QOZ80_3AG0218690, gene-QOZ80_3BG0263990, gene-QOZ80_6AG0536910, gene-QOZ80_6AG0537470, gene-QOZ80_6BG0490240, gene-QOZ80_6BG0490710
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.3HG0298130.1, HORVU.MOREX.r3.4HG0337720.1 ... HORVU.MOREX.r3.4HG0344750.1, HORVU.MOREX.r3.5HG0485710.1
Poaceae	Lolium multiflorum	4	gene-QYE76_010220, gene-QYE76_056847, gene-QYE76_062417 ... gene-QYE76_064242
Poaceae	Oryza coarctata	8	Oco01G026370, Oco02G027360, Oco05G021870, Oco06G022630 ... Oco17G006190, Oco18G006370, Oco21G003530, Oco22G004290
Poaceae	Oryza sativa	4	LOC_Os01g65600.1, LOC_Os03g50780.1, LOC_Os09g27620.1 ... LOC_Os11g12650.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G103400, gene-BS78_02G199800 ... gene-BS78_03G354900, gene-BS78_05G121300
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0104997, Pt_Chr0107623, Pt_Chr0204286, Pt_Chr0501994 ... Pt_Chr0502021, Pt_Chr0600037, Pt_Chr0600435, Pt_Chr0702043
Poaceae	Sporobolus alterniflorus	9	Chr01G006880, Chr02G003190, Chr03G021290, Chr05G030030 ... Chr07G018960, Chr08G020880, Chr10G008710, Chr12G030590, Chr31G003000
Poaceae	Thinopyrum elongatum	6	Tel3E01G616400, Tel4E01G086700, Tel4E01G143000 ... Tel5E01G125400, Tel5E01G378700, Tel7E01G286000
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG055420, gene_TRIDC3BG061970 ... gene_TRIDC4AG035860, gene_TRIDC4AG041420, gene_TRIDC4BG014170, gene_TRIDC5AG037010
Poaceae	Triticum aestivum	12	TraesCS3A02G388800.1, TraesCS3B02G419900.1 ... TraesCS3D02G380800.1, TraesCS4A02G225500.1, TraesCS4A02G265200.1, TraesCS4B02G049600.1, TraesCS4B02G090700.1, TraesCS4D02G050000.1, TraesCS4D02G087800.1, TraesCS5A02G233600.1, TraesCS5B02G232100.1, TraesCS5D02G240500.1
Poaceae	Zea mays	4	Zm00001eb167840_P003, Zm00001eb216130_P001 ... Zm00001eb314550_P001, Zm00001eb366330_P001
Poaceae	Zoysia japonica	5	nbis-gene-11205, nbis-gene-15943, nbis-gene-19715 ... nbis-gene-27401, nbis-gene-28574
Poaceae	Zoysia macrostachya	5	Zma_g11657, Zma_g18622, Zma_g2941, Zma_g32642, Zma_g9119
Portulacaceae	Portulaca oleracea	6	evm.TU.LG06.1090, evm.TU.LG06.1314, evm.TU.LG11.428 ... evm.TU.LG11.659, evm.TU.LG18.1903, evm.TU.LG20.19
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g25020, gene.Posoc05g10410, gene.Posoc08g01350
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.Scaffold_15_RagTag.256, evm.TU.Scaffold_15_RagTag.257 ... evm.TU.Scaffold_15_RagTag.267, evm.TU.Scaffold_17_RagTag.718, evm.TU.Scaffold_17_RagTag.745, evm.TU.Scaffold_6_RagTag.1319, evm.TU.Scaffold_6_RagTag.1395
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-16315, nbisL1-mrna-16499, nbisL1-mrna-23410 ... nbisL1-mrna-23438, nbisL1-mrna-26491, nbisL1-mrna-26510
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-3463, nbisL1-mrna-4198, nbisL1-mrna-4834 ... nbisL1-mrna-8294, nbisL1-mrna-8435, nbisL1-mrna-874
Rhizophoraceae	Ceriops zippeliana	7	nbisL1-mrna-1159, nbisL1-mrna-1197, nbisL1-mrna-17574 ... nbisL1-mrna-17582, nbisL1-mrna-20031, nbisL1-mrna-20070, nbisL1-mrna-22829
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000001l.160, evm.TU.utg000001l.168 ... evm.TU.utg000011l.859, evm.TU.utg000011l.888, evm.TU.utg000013l.385, evm.TU.utg000013l.403
Rhizophoraceae	Kandelia obovata	4	Maker00004354, Maker00004602, Maker00004674, Maker00007129
Rhizophoraceae	Rhizophora apiculata	9	nbisL1-mrna-10778, nbisL1-mrna-10797, nbisL1-mrna-11553 ... nbisL1-mrna-11560, nbisL1-mrna-13412, nbisL1-mrna-13442, nbisL1-mrna-20607, nbisL1-mrna-22431, nbisL1-mrna-23235
Rhizophoraceae	Rhizophora mangle	10	nbisL1-mrna-14302, nbisL1-mrna-14330, nbisL1-mrna-25219 ... nbisL1-mrna-25263, nbisL1-mrna-25361, nbisL1-mrna-2683, nbisL1-mrna-2690, nbisL1-mrna-3876, nbisL1-mrna-3915, nbisL1-mrna-3916
Salicaceae	Populus euphratica	6	populus_peu07237, populus_peu09294, populus_peu16379 ... populus_peu19777, populus_peu21258, populus_peu24822
Solanaceae	Lycium barbarum	4	gene-LOC132612587, gene-LOC132612611, gene-LOC132613673 ... gene-LOC132634293
Solanaceae	Solanum chilense	3	SOLCI001517400, SOLCI002088400, SOLCI004631500
Solanaceae	Solanum pennellii	4	gene-LOC107003584, gene-LOC107014193, gene-LOC107017475 ... gene-LOC107017988
Tamaricaceae	Reaumuria soongarica	3	STRG.15008_chr08_-, gene_18002, gene_5082
Tamaricaceae	Tamarix chinensis	2	TC05G2245, TC06G2609
Zosteraceae	Zostera marina	5	Zosma01g08330.v3.1, Zosma03g08780.v3.1, Zosma03g09230.v3.1 ... Zosma03g31030.v3.1, Zosma04g16330.v3.1