Basic Information
Locus ID:
Ag5G02365
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein RETICULATA-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 289988419 | 289999022 | + | Ag5G02365 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 42,574.63 Da | 32.11 | 90.03 | 0.04 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37860.3 | Protein of unknown function (DUF3411). Encodes a protein of unknown function. Mutants have pale leaves, lower cell density in the palisade parenchyma and increased sensitivity to ozone and virulent Pseudomonas syringae | 0 |
| RefSeq | XP_017215434.1 | PREDICTED: protein RETICULATA, chloroplastic-like [Daucus carota subsp. sativus] | 0 |
| B9DFK5 | Protein RETICULATA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RE PE=1 SV=1 | 0 | |
| TrEMBL | A0A161Y3Z9 | Protein RETICULATA-RELATED 1, chloroplastic-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024053 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 22.579411 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 18.867395 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 17.15621 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 16.325409 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 17.643578 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.651021 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.714212 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.750121 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 26.075268 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 27.038988 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 26.286203 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 26.872353 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 26.265692 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 20.643272 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.976094 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 18.228405 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 14.871832 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 18.155001 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.82583 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 19.066462 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 19.684046 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 16.392277 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.822624 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 17.501678 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 14.41455 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.752218 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 20.028009 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 18.125273 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 19.31324 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.158086 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.565135 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 6.291653 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 12.743785 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 15.535831 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.655255 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 10.0561 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.795015 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.124429 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.989279 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.771027 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.115226 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 17.582458 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 12.342587 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 15.938864 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 10.978053 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 26.979448 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 12.144083 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 23.186018 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 23.530491 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 21.471128 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg14831, jg35958 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_2033, gene_26044 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah011504, Ah032102 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_2g038900, BVRB_9g210850 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11910, Sbi_jg30118, Sbi_jg43572, Sbi_jg46855 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg18329, Seu_jg21150 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004094, GOSA_00009476 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl66081, Sgl70396, Sgl80328, Sgl82797 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000015790, gene:ENSEOMG00000017081 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.2AG0002960, CQ.Regalona.r1.2BG0004120 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30057300, pistato.v30064710, pistato.v30284800 |
| Apiaceae | Apium graveolens | 2 | Ag5G02365, Ag7G01201 |
| Arecaceae | Cocos nucifera | 2 | COCNU_10G010350, COCNU_16G008470 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103713015, gene-LOC103722547, gene-LOC113460985 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.83.V1.1, AsparagusV1_04.539.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G13170 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G37860.3, AT5G22790.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013586m.g.v1.0, Thhalv10016685m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g20170.v2.2, Sp6g22640.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g040920.2N, BniB04g046180.2N, BniB06g006700.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G1713, Ceq08G1101 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G1715, Cgl08G1126 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno07g12720, gene.Cymno08g00550 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0915s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g06660, gene.Thate08g24570 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8633 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1132, evm.TU.LG09.776 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002852, Pov_00015869 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G09351, Lb3G19927 |
| Poaceae | Echinochloa crus-galli | 7 | AH03.685, AH09.1620, BH03.807, BH09.1816, CH03.901 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_4AG0310070, gene-QOZ80_4BG0341250 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_041837, gene-QYE76_045151 |
| Poaceae | Oryza coarctata | 2 | Oco13G004310, Oco14G004970 |
| Poaceae | Oryza sativa | 4 | LOC_Os03g27340.1, LOC_Os04g44290.1, LOC_Os07g13590.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G108200, gene-BS78_06G163700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0302047, Pt_Chr0303912, Pt_Chr0306767 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr24G004220, Chr25G006940, Chr28G003660, Chr30G006850 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G447500, Tel2E01G650300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG031640, gene_TRIDC2AG054620 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G234300.1, TraesCS2A02G377800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb076950_P003, Zm00001eb303990_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-26583, nbis-gene-37118 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g20077, Zma_g4948, Zma_g6213 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.851, evm.TU.LG17.853 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g01990 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.595, evm.TU.Scaffold_1_RagTag.1723 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-24132, nbisL1-mrna-5516, nbisL1-mrna-5518 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1453, nbisL1-mrna-16362 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-19826, nbisL1-mrna-3768 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000016l.641, evm.TU.utg000027l.200 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00016264, Maker00018072 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-5010, nbisL1-mrna-5779 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12071, nbisL1-mrna-13687 |
| Salicaceae | Populus euphratica | 3 | populus_peu21964, populus_peu21975, populus_peu36787 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132600514, gene-LOC132630508 |
| Solanaceae | Solanum chilense | 2 | SOLCI002623600, SOLCI005692000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003233, gene-LOC107031515 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.3101_chr01_+, gene_8601 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G1866, TC07G0395 |
| Zosteraceae | Zostera marina | 1 | Zosma05g29460.v3.1 |