Basic Information
Locus ID:
Ag5G02363
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Mitogen-activated protein kinase-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 289692694 | 289719148 | + | Ag5G02363 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 138,534.17 Da | 41.44 | 82.20 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 368 | 418 | 0.0073 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 691 | 721 | 0.23 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 106 | 143 | 6.4E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 63 | 99 | 0.014 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 49 | 723 | 6.51E-46 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 273 | 440 | 1.24E-10 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 242 | 449 | 6.6E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 454 | 600 | 1.9E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 601 | 743 | 1.4E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 26 | 231 | 2.5E-40 | IPR015943 |
| SMART | SM00320 | WD40_4 | 548 | 587 | 3.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 379 | 418 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 596 | 635 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 152 | 186 | 3.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 456 | 494 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 313 | 356 | 7.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 682 | 721 | 1.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 638 | 679 | 3.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 102 | 143 | 1.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 497 | 544 | 0.23 | IPR001680 |
| SMART | SM00320 | WD40_4 | 56 | 99 | 1.4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 689 | 722 | 9.806668 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 400 | 419 | 8.804123 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 109 | 152 | 8.536777 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1020 | 1044 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 858 | 893 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09080.4 | - | 0 |
| RefSeq | XP_017219820.1 | PREDICTED: mitogen-activated protein kinase-binding protein 1 [Daucus carota subsp. sativus] | 0 |
| Q8HXL3 | WD repeat-containing protein 62 OS=Sus scrofa OX=9823 GN=WDR62 PE=3 SV=1 | 0 | |
| TrEMBL | A0A164T0G8 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024035 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.253314 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.746891 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.32551 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.483656 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 2.766377 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.633727 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.134835 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.796222 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 8.803616 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 9.130158 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 10.556017 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 6.37482 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 7.571932 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 4.887422 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.248623 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.285709 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.248992 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.114295 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.408074 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.65267 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.149654 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.833109 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.162412 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.381803 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.47018 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.918033 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.43098 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.889336 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.533342 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.922595 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.188381 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.010545 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 4.735098 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.649964 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.775538 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 3.204376 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.413054 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.687352 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.565577 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.287978 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.863634 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.994424 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.111377 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 8.040291 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.247643 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.052855 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.937884 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 14.121631 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 23.14366 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 25.006899 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14799 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30285450 |
| Apiaceae | Apium graveolens | 1 | Ag5G02363 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G25194 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G09080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022253m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07530.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g058390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1051 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1076, Cgl08G1077 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1010s00004.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1069 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006461 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09988 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1767 |
| Salicaceae | Populus euphratica | 1 | populus_peu11401 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630690 |
| Solanaceae | Solanum chilense | 1 | SOLCI000172200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029641 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4371 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1795 |