Basic Information
Locus ID:
Ag5G02326
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Inactive leucine-rich repeat receptor-like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 283606611 | 283609395 | + | Ag5G02326 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.33 | 39,365.03 Da | 50.56 | 96.94 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 65 | 278 | 7.6E-30 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 66 | 344 | 2.25E-50 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 152 | 349 | 1.1E-42 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 43 | 151 | 8.7E-13 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 62 | 350 | 30.181049 | IPR000719 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 27 | 7.0 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13290.2 | Protein kinase superfamily protein. Encodes a protein with predicted Ser/Thr kinase activity and membrane localization that is involved in the CLV3 signaling pathway that represses WUS expression in the meristem. Loss of function of CRN can suppress the phenotype caused by overexpression of CLV3. SOL2 isolated as a suppressor of root- specific overexpression of CLE19, a clavata3 like gene. sol2 partially suppresses the short root phenotype caused by CLE19 overexpression. Mutant flowers have extra carpels. | 0 |
| RefSeq | XP_017218508.1 | PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9LYU7 | Inactive leucine-rich repeat receptor-like protein kinase CORYNE OS=Arabidopsis thaliana OX=3702 GN=CRN PE=1 SV=1 | 0 | |
| TrEMBL | A0A164TGP6 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024629 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.660695 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.384882 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 2.182659 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.037122 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.061482 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.677151 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.932065 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.167485 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.798591 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.070065 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 14.977019 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.259151 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 9.840112 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.916886 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.128101 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 3.350383 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.529846 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.09658 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 5.372294 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.431611 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.764441 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.977452 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 17.859856 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 17.720648 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 12.674743 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.657164 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.391172 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.729444 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.252599 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.002389 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.543476 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.062435 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.452907 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.324869 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 2.73314 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.040479 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.065993 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.543526 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.088718 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.593567 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.484854 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.270857 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.504955 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.470231 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.89856 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.355871 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.301145 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.087621 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.434061 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 13.741531 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34452 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17974 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014027 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g149750 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42612, Sbi_jg45232 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26935 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002677 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35445, Sgl40857 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001570, gene:ENSEOMG00000012240 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0002030, CQ.Regalona.r1.6BG0002020 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30166060 |
| Apiaceae | Apium graveolens | 1 | Ag5G02326 |
| Arecaceae | Cocos nucifera | 1 | scaffold006649G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC108511901 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.1567.V1.1, AsparagusV1_06.913.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G13290.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013721m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g30700.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g049190.2N, BniB05g025030.2N, BniB08g006230.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0940 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0985 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g05220 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g10360 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5803 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1969 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019546 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00371 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4388, BH02.4421, CH02.4471 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0045180, gene-QOZ80_1BG0095170 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0312290.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057569 |
| Poaceae | Oryza coarctata | 2 | Oco01G028980, Oco02G030130 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g70260.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G389900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0600610, Pt_Chr0600655 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G002010, Chr05G032470, Chr08G018830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G697500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG062460, gene_TRIDC3BG070150 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G441700.1, TraesCS3B02G475600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb142560_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10925, nbis-gene-28273 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11853, Zma_g9311 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1409, evm.TU.LG05.1930 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g14200 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_15_RagTag.925, evm.TU.Scaffold_17_RagTag.61 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-27111, nbisL1-mrna-27298 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10627, nbisL1-mrna-11405 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14575, nbisL1-mrna-15492 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000001l.516, evm.TU.utg000013l.26 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002616, Maker00006523 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11135, nbisL1-mrna-6936 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16049, nbisL1-mrna-17612 |
| Salicaceae | Populus euphratica | 2 | populus_peu03920, populus_peu34746 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640795 |
| Solanaceae | Solanum chilense | 1 | SOLCI000945100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020343 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20164_chr07_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3685, TC04G0008 |
| Zosteraceae | Zostera marina | 1 | Zosma05g09280.v3.1 |