Basic Information
Locus ID:
Ag5G02257
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 266301132 | 266301713 | - | Ag5G02257 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 21,753.14 Da | 58.38 | 81.30 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017217962.1 | PREDICTED: uncharacterized protein LOC108195508 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A161ZJ23 | Response regulatory domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024076 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.253402 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.009887 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.115033 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.78201 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.433993 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.24616 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.541906 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.562917 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.960394 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.474076 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 3.396045 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 2.393929 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.628105 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.82301 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.126817 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.524302 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.030407 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.239593 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.152713 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.409691 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.336013 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.30853 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.108781 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.112914 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.100115 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.395497 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.426962 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.213118 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.196585 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg34560, jg5549, jg6986 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3551 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013819 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g147690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42750, Sbi_jg45374 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11236 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002560 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35116, Sgl40495 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003720, gene:ENSEOMG00000013416 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0003700, CQ.Regalona.r1.6BG0003690 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30227870, pistato.v30227880 |
| Apiaceae | Apium graveolens | 2 | Ag1G01248, Ag5G02257 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G002030 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712502, gene-LOC103714495 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.581.V1.1, AsparagusV1_10.1755.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G32210 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G67710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018396m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g22700.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g042580.2N, BniB03g044920.2N, BniB05g045860.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1298 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1371 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g12950 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g23550, gene.Thate09g12450 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1489, evm.TU.LG03.692 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022258, Pov_00034777 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G30673, Lb6G30678 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.4224, BH02.4252, CH02.4279 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0043490, gene-QOZ80_1BG0093430 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0304770.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057175 |
| Poaceae | Oryza coarctata | 2 | Oco01G027650, Oco02G028730 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g67770.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G371800 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr03G022150, Chr05G031160, Chr08G019870, Chr0G024340 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G620600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG055770, gene_TRIDC3BG062450 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G391600.1, TraesCS3B02G423600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb144290_P001, Zm00001eb365420_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-28441 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11748, Zma_g9214 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.1379, evm.TU.LG12.23, evm.TU.LG13.107 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g01000 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.826 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-27015, nbisL1-mrna-27202 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10239 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15576 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.454 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002632 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11205 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17695 |
| Salicaceae | Populus euphratica | 2 | populus_peu07664, populus_peu21711 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132630231, gene-LOC132633368, gene-LOC132641217 |
| Solanaceae | Solanum chilense | 2 | SOLCI003361900, SOLCI004920500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018660 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3372 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0387 |
| Zosteraceae | Zostera marina | 1 | Zosma05g08120.v3.1 |