Basic Information
Locus ID:
Ag5G02234
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 261983637 | 261987158 | + | Ag5G02234 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.68 | 39,943.20 Da | 40.59 | 64.66 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08238 | Sel1 repeat | 154 | 180 | 0.099 | IPR006597 |
| Pfam | PF08238 | Sel1 repeat | 123 | 148 | 5.0 | IPR006597 |
| Pfam | PF08238 | Sel1 repeat | 182 | 213 | 0.44 | IPR006597 |
| Pfam | PF08238 | Sel1 repeat | 216 | 250 | 6.5E-5 | IPR006597 |
| Pfam | PF08238 | Sel1 repeat | 252 | 286 | 9.6E-6 | IPR006597 |
| SUPERFAMILY | SSF81383 | F-box domain | 62 | 117 | 3.79E-7 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 132 | 318 | 2.46E-36 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 195 | 350 | 6.2E-34 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 107 | 194 | 9.1E-11 | IPR011990 |
| Gene3D | G3DSA:1.20.1280.50 | - | 71 | 106 | 2.3E-5 | - |
| SMART | SM00671 | sel1 | 181 | 214 | 0.043 | IPR006597 |
| SMART | SM00671 | sel1 | 110 | 148 | 5.7 | IPR006597 |
| SMART | SM00671 | sel1 | 251 | 286 | 1.1E-6 | IPR006597 |
| SMART | SM00671 | sel1 | 215 | 250 | 1.3E-5 | IPR006597 |
| SMART | SM00671 | sel1 | 149 | 180 | 13.0 | IPR006597 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70590.1 | F-box family protein. | 0 |
| RefSeq | XP_017215197.1 | PREDICTED: F-box protein At1g70590 [Daucus carota subsp. sativus] | 0 |
| Q94C27 | F-box protein At1g70590 OS=Arabidopsis thaliana OX=3702 GN=At1g70590 PE=2 SV=1 | 0 | |
| TrEMBL | A0A161ZM88 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024434 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 54.00536 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 33.563736 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 45.686867 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 47.642151 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 41.866676 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 57.301525 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 55.089123 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 69.56353 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 48.363651 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 43.588791 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 44.776958 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 40.790623 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 39.326061 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 39.369495 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 32.227005 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 26.313456 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 29.407284 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 21.529385 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 20.144428 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 19.994106 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 29.052277 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 34.691353 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 32.443455 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 29.083397 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 32.167286 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 27.25424 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 20.089039 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 22.320084 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 24.9184 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 23.554468 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 18.685938 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 16.330936 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 25.146257 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 26.583578 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 22.065758 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 30.310471 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 21.729662 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 25.292685 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 14.686593 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 19.528715 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.549768 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 30.938406 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 30.220787 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 36.197231 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 40.09671 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 26.273052 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 34.88512 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 36.25584 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 39.406612 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 29.805672 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg5520, jg9495 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3605 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013639 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g148140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42856, Sbi_jg45474 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11331 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002477 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl35260, Sgl35273, Sgl40639 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003499, gene:ENSEOMG00000012582 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0004700, CQ.Regalona.r1.6BG0004910 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30221740, pistato.v30295790 |
| Apiaceae | Apium graveolens | 1 | Ag5G02234 |
| Arecaceae | Cocos nucifera | 1 | scaffold000161G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103698089 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1424.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G20745 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G70590.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018848m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g25750.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g048380.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1363 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G1445 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g03290 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g15720 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.603 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022328, Pov_00034269 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37097, Lb4G24102 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4062, BH09.1461, CH09.1572 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0313670, gene-QOZ80_4BG0344810 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0175210.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_044624, gene-QYE76_046834 |
| Poaceae | Oryza coarctata | 1 | Oco07G008490 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g40030.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G133100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302317, Pt_Chr0302369 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G008820, Chr23G010670 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G585300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG048910, gene_TRIDC2BG051510 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G327700.1, TraesCS2B02G354300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb344380_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36875 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19909 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG13.165 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g08120 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.776 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26965 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12460 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15619 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.421 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002695 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11239 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17736 |
| Salicaceae | Populus euphratica | 3 | populus_peu07719, populus_peu21774, populus_peu21781 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132625516, gene-LOC132641128 |
| Solanaceae | Solanum chilense | 1 | SOLCI000158400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008915, gene-LOC107019035 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.22550_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1150 |
| Zosteraceae | Zostera marina | 1 | Zosma02g03160.v3.1 |