Basic Information
Locus ID:
Ag5G02153
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Receptor like protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 250717276 | 250720129 | + | Ag5G02153 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.96 | 95,007.07 Da | 48.42 | 88.20 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 127 | 410 | 6.38414E-85 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 525 | 790 | 2.1E-25 | IPR001245 |
| Pfam | PF00069 | Protein kinase domain | 122 | 406 | 1.2E-41 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 489 | 790 | 1.97E-47 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 104 | 431 | 5.88E-70 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 476 | 588 | 9.2E-22 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 95 | 197 | 6.2E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 198 | 415 | 3.2E-48 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 593 | 817 | 1.6E-43 | - |
| SMART | SM00220 | serkin_6 | 121 | 385 | 2.2E-30 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 121 | 421 | 36.866432 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 512 | 798 | 23.198853 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 243 | 255 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 127 | 150 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32800.1 | protein kinase family protein. | 0 |
| RefSeq | XP_017218102.1 | PREDICTED: receptor like protein kinase S.2-like [Daucus carota subsp. sativus] | 0 |
| O48837 | Receptor like protein kinase S.2 OS=Arabidopsis thaliana OX=3702 GN=LECRKS2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A161ZMB9 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024474 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.027401 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.046233 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.020403 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.136834 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.15795 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.069272 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.089271 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.028814 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.225441 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.058316 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.02975 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.04896 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.085115 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.788386 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.791101 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 3.956376 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.033586 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.030871 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.012409 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.835951 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.337744 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.428868 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.105736 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.225748 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.490916 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.137614 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.309903 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.825985 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.939112 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.041706 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.094399 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 6.835436 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.156665 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.165171 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12822 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4820 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022547 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g220560 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59492, Sbi_jg63162 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23736 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020675 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02845, Sgl07966 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000031007, gene:ENSEOMG00000042728 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3BG0026570, CQ.Regalona.r1.3BG0026590 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30241300 |
| Apiaceae | Apium graveolens | 3 | Ag1G01729, Ag5G02153, Ag8G02168 |
| Arecaceae | Cocos nucifera | 1 | scaffold000335G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697920 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.195.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G34015, Ftri17G18959 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G32800.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016233m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g15190.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g020640.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0736 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0783 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g04650, gene.Cymno05g03350 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g22860 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4183 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.570 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00021348 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0682290, gene-QOZ80_9BG0707900 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0468050.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_003923, gene-QYE76_006513 |
| Poaceae | Oryza coarctata | 1 | Oco22G005680 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g25860.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G297600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0704991 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G007660, Chr17G006930 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G276500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG026750, gene_TRIDC5BG027950 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G161500.1.cds1, TraesCS5B02G159000.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb344770_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-48781 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18732 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG07.38 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g07000 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.982 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15684 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-929 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-850 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.236 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22879 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4375 |
| Salicaceae | Populus euphratica | 3 | populus_peu01377, populus_peu24227, populus_peu24237 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132611385 |
| Solanaceae | Solanum chilense | 1 | SOLCI002050700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029130 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.20497_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G2155 |