Basic Information
Locus ID:
Ag5G02146
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
PUB domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 249978010 | 249986947 | - | Ag5G02146 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 46,914.72 Da | 46.95 | 74.65 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14290 | UBA_PUB_plant | 113 | 161 | 1.34392E-19 | - |
| CDD | cd10461 | PUB_UBA_plant | 307 | 413 | 2.19398E-58 | - |
| Pfam | PF09409 | PUB domain | 319 | 390 | 1.7E-23 | IPR018997 |
| Pfam | PF00627 | UBA/TS-N domain | 115 | 151 | 1.4E-6 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 103 | 166 | 1.02E-14 | IPR009060 |
| SUPERFAMILY | SSF143503 | PUG domain-like | 294 | 409 | 3.92E-27 | IPR036339 |
| Gene3D | G3DSA:1.10.8.10 | - | 95 | 170 | 1.0E-17 | - |
| Gene3D | G3DSA:1.20.58.2190 | - | 305 | 404 | 1.3E-27 | - |
| SMART | SM00580 | PGNneu | 323 | 386 | 2.9E-20 | - |
| SMART | SM00165 | uba_6 | 115 | 153 | 5.8E-4 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 113 | 154 | 12.016758 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 287 | - | - |
| Coils | Coil | Coil | 240 | 264 | - | - |
| Coils | Coil | Coil | 184 | 216 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04850.1 | ubiquitin-associated (UBA)/TS-N domain-containing protein. | 0 |
| RefSeq | XP_017215165.1 | PREDICTED: UBX domain-containing protein 1 [Daucus carota subsp. sativus] | 0 |
| Q9BZV1 | UBX domain-containing protein 6 OS=Homo sapiens OX=9606 GN=UBXN6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164TC10 | UBA domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024465 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 128.655731 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 112.739067 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 102.77037 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 106.73967 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 98.734917 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 78.405609 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 81.423355 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 67.860474 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 142.445312 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 137.130798 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 138.56572 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 140.347519 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 138.672501 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 117.255547 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 97.64035 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 102.195412 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 109.48381 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 105.848183 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 86.470291 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 99.073975 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 108.406334 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 138.881393 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 170.899811 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 145.016037 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 124.264183 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 122.143677 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 110.780083 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 93.892227 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 123.623871 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 44.702564 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 59.710258 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 46.9235 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 52.547306 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 61.386185 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 64.679695 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 55.622406 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 33.099617 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 40.205383 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 90.79834 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 56.635326 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 39.001629 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 165.037994 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 132.617157 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 160.015533 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 149.968704 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 171.053253 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 123.880676 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 164.612473 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 173.030685 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 167.32373 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg36114, jg5885, jg5886 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_4815, gene_6484 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah020879, Ah022536, Ah027692, Ah028303 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g065820, BVRB_7g167870 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg26574, Sbi_jg33992, Sbi_jg59476, Sbi_jg63174 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15094, Seu_jg23719 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011897, GOSA_00020665 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl02861, Sgl07978, Sgl73859, Sgl77363 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000008418, gene:ENSEOMG00000029326 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0025540, CQ.Regalona.r1.3BG0026460 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30014330, pistato.v30241900 |
| Apiaceae | Apium graveolens | 3 | Ag1G00517, Ag5G02146, Ag9G02890 |
| Arecaceae | Cocos nucifera | 2 | COCNU_11G002670, COCNU_15G004730 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103695657, gene-LOC103710594 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.434.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G33263 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G04850.1, AT5G48690.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004673m.g.v1.0, Thhalv10007758m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g03690.v2.2, Sp2g19100.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g069760.2N, BniB03g001090.2N, BniB06g045890.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq06G1969, Ceq06G1970, Ceq07G0722 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl04G2321, Cgl06G2060, Cgl07G0770 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g02750 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0045s00031.v1.0, Dusal.0045s00032.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g15200 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-12584, nbisL1-mrna-9759 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.1586, evm.TU.LG11.529 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00019458, Pov_00036444 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G15801 |
| Poaceae | Echinochloa crus-galli | 6 | AH07.1864, AH08.2150, BH07.1853, BH08.2267, CH07.1712 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0131630, gene-QOZ80_2BG0187030 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.6HG0553470.1, HORVU.MOREX.r3.7HG0683160.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_030215 |
| Poaceae | Oryza coarctata | 3 | Oco03G010610, Oco04G010970, Oco16G012200 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g30180.1, LOC_Os08g41500.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G140000, gene-BS78_07G199700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0705178 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr13G012110, Chr15G013020, Chr20G001410, Chr29G001770 |
| Poaceae | Thinopyrum elongatum | 2 | Tel6E01G214900, Tel7E01G453500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG011140, gene_TRIDC6BG017010 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS6A02G091500.1, TraesCS6B02G119800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb175040_P001, Zm00001eb181030_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-20936, nbis-gene-42670 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13549, Zma_g23301 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG13.1509, evm.TU.LG16.1662, evm.TU.LG21.1179 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g06010 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.1385, evm.TU.Scaffold_6_RagTag.997 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-15676, nbisL1-mrna-21062 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11451 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-18633, nbisL1-mrna-18634, nbisL1-mrna-2631 ... |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.630, evm.TU.utg000019l.406 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002006, Maker00007628 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12252, nbisL1-mrna-1363 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-18116, nbisL1-mrna-4941, nbisL1-mrna-4942 |
| Salicaceae | Populus euphratica | 3 | populus_peu01367, populus_peu24269, populus_peu30896 |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132604386, gene-LOC132610914, gene-LOC132611544 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI002051300, SOLCI004865900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107007674, gene-LOC107029831, gene-LOC107030588 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.12257_chr07_-, STRG.20503_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 3 | TC11G1840, TC12G2141, TC12G2142 |
| Zosteraceae | Zostera marina | 1 | Zosma02g22590.v3.1 |