halophFGD

Basic Information

Locus ID: Ag5G02113

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: calcium-binding protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	245029078	245029999	+	Ag5G02113

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.46	17,646.91 Da	23.77	92.01	-0.13

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00051	EFh	85	146	1.79966E-17	IPR002048
Pfam	PF13499	EF-hand domain pair	9	71	2.6E-9	IPR002048
Pfam	PF13499	EF-hand domain pair	84	146	1.2E-13	IPR002048
SUPERFAMILY	SSF47473	EF-hand	3	146	3.23E-39	IPR011992
Gene3D	G3DSA:1.10.238.10	-	2	150	1.7E-42	-
SMART	SM00054	efh_1	121	149	1.6E-6	IPR002048
SMART	SM00054	efh_1	85	113	8.3E-5	IPR002048
SMART	SM00054	efh_1	46	74	0.6	IPR002048
SMART	SM00054	efh_1	10	38	0.027	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	81	116	14.84815	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	6	41	12.867577	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	117	152	12.923368	IPR002048
ProSiteProfiles	PS50222	EF-hand calcium-binding domain profile.	42	77	9.464338	IPR002048
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	130	142	-	IPR018247
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	94	106	-	IPR018247
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	55	67	-	IPR018247
ProSitePatterns	PS00018	EF-hand calcium-binding domain.	19	31	-	IPR018247

Gene Ontology

Molecular Function:

GO:0005509 (calcium ion binding)

KEGG Pathway

KO Term:

K13448 (calcium-binding protein CML)

Pathway:

ko04626 (Plant-pathogen interaction) map04626 (Plant-pathogen interaction)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G25600.1	Calcium-binding EF-hand family protein.
RefSeq	XP_017217720.1	PREDICTED: probable calcium-binding protein CML16 [Daucus carota subsp. sativus]
Swiss-Prot	Q9LI84	Probable calcium-binding protein CML16 OS=Arabidopsis thaliana OX=3702 GN=CML16 PE=2 SV=2
TrEMBL	A0A161ZI74	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023706 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	2.151748	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	3.347861	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	2.562751	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.048152	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	3.65613	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.774701	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.862054	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.450609	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	15.858234	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	18.074406	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	12.474366	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	9.694161	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	11.107279	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	11.604857	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	18.597998	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	21.30323	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	4.823395	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	16.347065	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	27.184956	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	21.504604	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	25.780113	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	5.034256	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	3.044228	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	5.101227	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	11.860988	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	2.193433	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	3.710103	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	5.418356	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	3.951324	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	7.591601		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	4.849954		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	5.449975		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	47.871967		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	31.479246		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	58.432156		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	60.362576		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	29.65411		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	50.544937		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	5.030934	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	10.723639	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	6.651883	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	18.536514	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	15.286859	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	10.258999	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	12.798088	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	15.725175	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	8.647941	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	26.586224	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	11.289622	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	8.293246	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg4982, jg5314, jg7201, jg7495
Aizoaceae	Mesembryanthemum crystallinum	2	gene_19737, gene_3444
Amaranthaceae	Atriplex hortensis	4	Ah001370, Ah018361, Ah026094, Ah026095
Amaranthaceae	Beta vulgaris	3	BVRB_3g049760, BVRB_3g065090, BVRB_6g140870
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg12795, Sbi_jg14831, Sbi_jg30921, Sbi_jg53096 ... Sbi_jg55608, Sbi_jg58355
Amaranthaceae	Salicornia europaea	3	Seu_jg25957, Seu_jg26166, Seu_jg8778
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00004820, GOSA_00017974, GOSA_00017975, GOSA_00026930
Amaranthaceae	Suaeda glauca	9	Sgl01080, Sgl06165, Sgl34081, Sgl34306, Sgl39708, Sgl54904 ... Sgl54905, Sgl60159, Sgl60160
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000002563, gene:ENSEOMG00000002741 ... gene:ENSEOMG00000003487, gene:ENSEOMG00000006445, gene:ENSEOMG00000021033, gene:ENSEOMG00000025609, gene:ENSEOMG00000026220, gene:ENSEOMG00000030675, gene:ENSEOMG00000044328
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3AG0007420, CQ.Regalona.r1.3BG0007470 ... CQ.Regalona.r1.5AG0018680, CQ.Regalona.r1.5BG0019900, CQ.Regalona.r1.6BG0016490
Apiaceae	Apium graveolens	4	Ag1G01529, Ag5G02113, Ag6G00819, Ag7G00527
Arecaceae	Cocos nucifera	3	COCNU_10G002330, COCNU_14G005220, scaffold020587G000030
Arecaceae	Phoenix dactylifera	5	gene-LOC103696753, gene-LOC103714578, gene-LOC103715132 ... gene-LOC103715953, gene-LOC120110815
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.3626.V1.1, AsparagusV1_04.1194.V1.1 ... AsparagusV1_10.158.V1.1
Asteraceae	Flaveria trinervia	4	Ftri13G23436, Ftri18G17581, Ftri1G20496, FtriNA28860
Brassicaceae	Arabidopsis thaliana	4	AT1G18530.1, AT1G32250.1, AT3G03000.1, AT3G25600.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10005049m.g.v1.0, Thhalv10008984m.g.v1.0 ... Thhalv10009363m.g.v1.0, Thhalv10021666m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g16480.v2.2, Sp1g27930.v2.2, Sp2g14880.v2.2 ... Sp3g02060.v2.2
Brassicaceae	Brassica nigra	8	BniB01g004330.2N, BniB02g066270.2N, BniB03g028070.2N ... BniB03g035490.2N, BniB04g013780.2N, BniB04g033050.2N, BniB06g066780.2N, BniB07g060910.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq01G0274, Ceq03G2372, Ceq07G0505, Ceq09G1785
Casuarinaceae	Casuarina glauca	5	Cgl01G0269, Cgl03G2510, Cgl07G0528, Cgl09G0968, Cgl09G1959
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno09g07860
Dunaliellaceae	Dunaliella salina	1	Dusal.1010s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g06900, gene.Thate02g22450, gene.Thate09g04650
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-11586, nbisL1-mrna-1511
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.473, evm.TU.LG05.832, evm.TU.LG10.446
Plantaginaceae	Plantago ovata	3	Pov_00003032, Pov_00019373, Pov_00027400
Plumbaginaceae	Limonium bicolor	1	Lb1G00868
Poaceae	Echinochloa crus-galli	6	AH03.3094, BH01.3117, BH02.2353, BH05.1455, CH02.2528 ... CH05.1644
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_1AG0023620, gene-QOZ80_2AG0118150 ... gene-QOZ80_2BG0171870, gene-QOZ80_5AG0362090, gene-QOZ80_5BG0410300
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0053300.1.CDS1 ... HORVU.MOREX.r3.1HG0080710.1, HORVU.MOREX.r3.1HG0091390.1.CDS1, HORVU.MOREX.r3.3HG0270160.1.CDS1
Poaceae	Lolium multiflorum	6	gene-QYE76_013031, gene-QYE76_013069, gene-QYE76_015191 ... gene-QYE76_038992, gene-QYE76_053655, gene-QYE76_071923
Poaceae	Oryza coarctata	5	Oco01G010940, Oco01G014060, Oco02G011420, Oco06G022770 ... Oco09G017590
Poaceae	Oryza sativa	3	LOC_Os01g32120.1, LOC_Os01g41990.1, LOC_Os05g50180.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G274800, gene-BS78_03G187000 ... gene-BS78_09G246700
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0503386, Pt_Chr0503393, Pt_Chr0603245, Pt_Chr0605182
Poaceae	Sporobolus alterniflorus	7	Chr02G016040, Chr05G017800, Chr09G006070, Chr0G019460 ... Chr13G018810, Chr18G012680, Chr22G000570
Poaceae	Thinopyrum elongatum	3	Tel1E01G337200, Tel1E01G689000, Tel3E01G373400
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG029380, gene_TRIDC1AG061200 ... gene_TRIDC1BG034970, gene_TRIDC1BG070160, gene_TRIDC3AG032290, gene_TRIDC3BG036780
Poaceae	Triticum aestivum	8	TraesCS1A02G193700.1.cds1, TraesCS1A02G416100.1.cds1 ... TraesCS1B02G208700.1.cds1, TraesCS1B02G446400.1.cds1, TraesCS1D02G197600.1.cds1, TraesCS3A02G216300.1.cds1, TraesCS3B02G246100.1.cds1, TraesCS3D02G217900.1.cds1
Poaceae	Zea mays	4	Zm00001eb161480_P001, Zm00001eb202510_P001 ... Zm00001eb224870_P001, Zm00001eb296740_P001
Poaceae	Zoysia japonica	3	nbis-gene-24772, nbis-gene-29313, nbis-gene-39275
Poaceae	Zoysia macrostachya	4	Zma_g10615, Zma_g12991, Zma_g28864, Zma_g8174
Portulacaceae	Portulaca oleracea	9	evm.TU.LG01.2708, evm.TU.LG01.661, evm.TU.LG02.119 ... evm.TU.LG03.103, evm.TU.LG03.40, evm.TU.LG04.111, evm.TU.LG09.1355, evm.TU.LG13.595, evm.TU.LG21.289
Posidoniaceae	Posidonia oceanica	6	gene.Posoc02g20870, gene.Posoc03g18930, gene.Posoc04g00790 ... gene.Posoc04g05020, gene.Posoc04g08340, gene.Posoc06g04060
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_15_RagTag.27, evm.TU.Scaffold_16_RagTag.508 ... evm.TU.Scaffold_2_RagTag.1693, evm.TU.Scaffold_4_RagTag.798
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-22770, nbisL1-mrna-26314, nbisL1-mrna-28562
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-11173, nbisL1-mrna-12127, nbisL1-mrna-17740 ... nbisL1-mrna-4675
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-13984, nbisL1-mrna-16549, nbisL1-mrna-17378 ... nbisL1-mrna-22139
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000001l.10, add.evm.TU.utg000009l.99 ... add.evm.TU.utg000022l.114
Rhizophoraceae	Kandelia obovata	1	Maker00005079
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-17804, nbisL1-mrna-18055, nbisL1-mrna-21385 ... nbisL1-mrna-22554
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-16735, nbisL1-mrna-19286, nbisL1-mrna-2899 ... nbisL1-mrna-6390
Salicaceae	Populus euphratica	3	populus_peu03223, populus_peu20951, populus_peu34071
Solanaceae	Lycium barbarum	5	gene-LOC132615449, gene-LOC132626202, gene-LOC132632251 ... gene-LOC132634259, gene-LOC132635333
Solanaceae	Solanum chilense	4	SOLCI002067500, SOLCI005335600, SOLCI005589000 ... SOLCI007448000
Solanaceae	Solanum pennellii	5	gene-LOC107014001, gene-LOC107014545, gene-LOC107015792 ... gene-LOC107026854, gene-LOC107027412
Tamaricaceae	Reaumuria soongarica	3	STRG.23691_chr05_+, gene_204, gene_3921
Tamaricaceae	Tamarix chinensis	3	TC01G4045, TC03G0303, TC06G2820
Zosteraceae	Zostera marina	5	Zosma01g13280.v3.1, Zosma03g03610.v3.1, Zosma04g05220.v3.1 ... Zosma06g00430.v3.1, Zosma06g20220.v3.1