Basic Information
Locus ID:
Ag5G02104
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
S-adenosyl-l-methionine decarboxylase leader peptide
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 244368085 | 244368348 | - | Ag5G02104 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.78 | 5,583.27 Da | 35.24 | 50.77 | -0.85 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017619694.1 | PREDICTED: uncharacterized protein LOC108464108 [Gossypium arboreum] | 0 |
| TrEMBL | A0A5J5AG46 | S-adenosyl-L-methionine-dependent methyltransferase superfamily protein OS=Nyssa sinensis OX=561372 GN=F0562_033957 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 62.894131 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 33.18084 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 28.498621 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 32.801369 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 29.613714 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 24.371454 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 36.532875 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 13.41849 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 8.163936 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.349233 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 11.27943 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 32.451622 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.088552 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 16.866877 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.501689 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 12.083657 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.424541 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 19.080147 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.767847 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 47.282497 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 40.236015 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 23.949509 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 17.662207 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.975336 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 27.60568 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 24.517748 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 23.346579 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 22.391966 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 23.094311 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.664992 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 8.711771 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.195175 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 51.511669 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 27.498884 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 39.763435 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 12.804334 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 9.415751 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 17.450809 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.922825 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 12.763968 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.076877 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 98.792976 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 50.033516 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.355314 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 19.582773 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 66.161469 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 27.446829 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.837841 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.751764 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.506155 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg34883, jg40141, jg9209 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008545 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0017380, CQ.Regalona.r1.8BG0018410 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30264660 |
| Apiaceae | Apium graveolens | 4 | Ag5G02104, Ag6G00473, Ag6G01476, Ag8G02066 |
| Arecaceae | Cocos nucifera | 1 | scaffold012204G000030 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2579.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri17G31066, Ftri18G28328, Ftri8G32720 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G02468.1, AT3G25572.1, AT5G15948.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015839m.g.v1.0 |
| Brassicaceae | Brassica nigra | 5 | BniB01g061180.2N, BniB02g046830.2N, BniB04g058120.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G2647, Ceq08G0807 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0815 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g03270 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g07420, gene.Thate08g24020 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.388 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.2239, CH02.2260, CH03.2307 |
| Poaceae | Oryza coarctata | 1 | Oco03G015070 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G187600, gene-BS78_04G193000 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0204564, Pt_Chr0204619, Pt_Chr0302273 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G000080, Chr23G009610, Chr26G010140, Chr30G009870 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G362300, Tel6E01G424500 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G219400.1, TraesCS6B02G248900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb313410_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5178 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21553 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.2608, evm.TU.LG03.123, evm.TU.LG03.23 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g02230 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_17_RagTag.987, evm.TU.Scaffold_6_RagTag.439 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26305 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16623, nbisL1-mrna-344 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.237, evm.TU.utg000013l.552 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008171 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10947, nbisL1-mrna-11723 |
| Salicaceae | Populus euphratica | 2 | populus_peu05539, populus_peu20943 |