Basic Information
Locus ID:
Ag5G02080
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 241505099 | 241514803 | - | Ag5G02080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 134,801.41 Da | 48.62 | 79.84 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 913 | 1226 | 3.33E-9 | IPR036322 |
| Gene3D | G3DSA:3.30.160.360 | - | 8 | 135 | 2.2E-17 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 912 | 1228 | 3.7E-6 | IPR015943 |
| ProSiteProfiles | PS51543 | FYR domain FYRC motif profile. | 64 | 144 | 14.08457 | IPR003889 |
| ProSiteProfiles | PS51542 | FYR domain FYRN motif profile. | 4 | 63 | 15.477455 | IPR003888 |
Gene Ontology
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G26330.1 | DNA binding. | 0 |
| RefSeq | XP_017216175.1 | PREDICTED: uncharacterized protein LOC108193855 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164STK5 | FYR N-terminal domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023750 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 1.123365 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.342811 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.451244 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.851488 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.545808 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.414146 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.254819 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.482105 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 5.347229 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 5.255193 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 5.67325 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 4.713062 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.964463 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.066022 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.252816 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.465766 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.142125 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.912885 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.621055 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.382119 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.785969 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.537374 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.661624 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.150826 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.85445 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 1.461294 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.65847 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.079209 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.526873 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.429858 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.219474 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.281378 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.126517 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.892897 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.268401 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.013576 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.062937 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.093901 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.617205 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.265596 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.375848 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.253658 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.20519 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.551663 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.355352 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.219201 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.542575 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.865162 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.184764 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.778321 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9246 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3879 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026371 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g136210 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14023, Sbi_jg51934 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9936 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00023562, GOSA_00023563 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34851, Sgl40238 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000026349 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0016880, CQ.Regalona.r1.6BG0017990 |
| Apiaceae | Apium graveolens | 1 | Ag5G02080 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722881 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2758.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri11G33661 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G26330.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006590m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g22360.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g040470.2N, BniB04g045200.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0440 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0457 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g03020 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0646s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g29850 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.377 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027304 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G32599 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1182, AH03.1183, BH03.1346 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0328520, gene-QOZ80_4BG0360570 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0467390.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_003840 |
| Poaceae | Oryza coarctata | 1 | Oco17G000080 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g01360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G098200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0705155 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr0G006340, Chr0G006350, Chr23G019290, Chr26G000610 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G272500 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5AG026270, gene_TRIDC5BG027210 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G158800.1, TraesCS5B02G155300.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb095700_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-46891 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19193 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.514, evm.TU.LG21.211 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g06220 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.458 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-22834, nbisL1-mrna-22880 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1663 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14969 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000013l.314, evm.TU.utg000013l.315 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006702 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-7222, nbisL1-mrna-7223 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14910 |
| Salicaceae | Populus euphratica | 2 | populus_peu06822, populus_peu06823 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641940 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018710 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24214_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G0477 |
| Zosteraceae | Zostera marina | 1 | Zosma03g20870.v3.1 |