Basic Information
Locus ID:
Ag5G02037
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Homologous-pairing protein 2 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 236153870 | 236164882 | - | Ag5G02037 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.79 | 33,026.24 Da | 52.34 | 82.08 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18517 | Leucine zipper with capping helix domain | 219 | 276 | 9.2E-17 | IPR040661 |
| Pfam | PF07106 | TBPIP/Hop2 winged helix domain | 110 | 138 | 2.3E-9 | IPR010776 |
| Gene3D | G3DSA:1.10.10.10 | - | 98 | 148 | 3.3E-9 | IPR036388 |
| Coils | Coil | Coil | 151 | 185 | - | - |
| Coils | Coil | Coil | 188 | 208 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13330.1 | Arabidopsis Hop2 homolog. Encodes the Arabidopsis Hop2 homologue. In other species, Hop2 is proposed to be involved in inter-homolog bias in double strand break repair. | 0 |
| RefSeq | XP_017218051.1 | PREDICTED: homologous-pairing protein 2 homolog [Daucus carota subsp. sativus] | 0 |
| Q9FX64 | Homologous-pairing protein 2 homolog OS=Arabidopsis thaliana OX=3702 GN=HOP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164SRP0 | Homologous-pairing protein 2 homolog OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023669 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.094583 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.08565 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.1868 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.699847 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 3.421137 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.069958 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.547057 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.601727 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 2.17582 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 4.026231 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 1.9761 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 4.785933 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.310567 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 1.936935 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.415931 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.021604 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.016504 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.284756 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.889872 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.550993 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.688281 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.043401 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.630786 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.733765 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.84951 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.532382 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 1.262369 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 1.606086 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.361864 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.053098 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.84214 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.249911 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.81076 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.160005 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.288308 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.343637 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.207233 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.715384 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.36059 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.361286 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.512845 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.294672 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.635176 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.231089 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.490364 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg7233 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18438 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025861 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g142210 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13809, Sbi_jg52117 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9729 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018880 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl34157, Sgl39792 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001288, gene:ENSEOMG00000002182 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0015660 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30225550 |
| Apiaceae | Apium graveolens | 2 | Ag1G00707, Ag5G02037 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G005110 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701006 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1504.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G17476 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G13330.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008697m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g11840.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g008190.2N, BniB04g027890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2054 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2192 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g08510 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0530s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g24360 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.528 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00019297 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01556 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.860, BH01.1005, CH01.1049 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0219290, gene-QOZ80_3BG0264550 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0337010.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_062458, gene-QYE76_062832 |
| Poaceae | Oryza coarctata | 2 | Oco05G021500, Oco06G022310 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g50220.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G107800 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G007200, Chr07G025860, Chr12G030290, Chr23G016930 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G081000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG041970, gene_TRIDC4BG007030 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G269200.1, TraesCS4B02G045000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb216450_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15906, nbis-gene-49695 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2964 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.651, evm.TU.LG21.338 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g00740 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.95 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17788 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.54 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004595 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11668 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2837 |
| Salicaceae | Populus euphratica | 2 | populus_peu07048, populus_peu21010 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641796 |
| Solanaceae | Solanum chilense | 1 | SOLCI003188200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018889 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19500_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0219 |
| Zosteraceae | Zostera marina | 1 | Zosma06g09440.v3.1 |