Basic Information
Locus ID:
Ag5G02033
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 235587600 | 235595505 | + | Ag5G02033 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.53 | 40,799.11 Da | 56.98 | 81.22 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 7.64727E-29 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 155 | 204 | 3.63551E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 164 | 199 | 1.9E-13 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 342 | 377 | 9.9E-12 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 267 | 322 | 1.3E-22 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 6.3E-19 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 158 | 209 | 1.04E-11 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 263 | 328 | 5.36E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 317 | 383 | 1.64E-15 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 87 | 5.99E-22 | IPR029071 |
| Gene3D | G3DSA:1.10.8.10 | - | 333 | 381 | 1.3E-23 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 7.9E-28 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 257 | 322 | 1.6E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 154 | 204 | 4.2E-22 | - |
| SMART | SM00165 | uba_6 | 342 | 379 | 1.2E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 161 | 201 | 2.7E-4 | IPR015940 |
| SMART | SM00727 | CBM | 265 | 308 | 1.2E-7 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.5E-19 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 385 | 4.1E-113 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 339 | 380 | 15.31806 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 159 | 202 | 12.33002 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.738609 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 293 | 315 | 1.2E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 353 | 367 | 1.2E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 368 | 383 | 1.2E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 336 | 352 | 1.2E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 122 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_017219632.1 | PREDICTED: ubiquitin receptor RAD23d-like isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A175YQF2 | Ubiquitin receptor RAD23 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026729 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 53.38221 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 49.247494 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 54.958759 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 48.258888 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 51.406124 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 64.424202 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 47.733044 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 41.62373 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 87.932037 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 92.220665 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 88.517006 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 92.156235 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 89.83239 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 96.767479 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 63.507912 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 65.181625 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 63.469437 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 58.535027 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 59.161438 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 60.569504 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 64.858376 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 92.515709 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 111.94326 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 90.449547 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 82.458267 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 66.189621 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 61.76593 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 53.12215 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 63.998825 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 53.044598 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 68.913368 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 57.994846 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 169.380219 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 98.347923 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 168.878952 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 97.013817 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 80.652199 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 84.841499 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 51.050098 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 28.052763 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 24.856331 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 86.916092 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 90.061142 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 132.1203 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 121.111389 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 84.584259 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 95.252098 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 104.281082 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 99.048424 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 93.956573 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology