halophFGD

Basic Information

Locus ID: Ag5G02028

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Homocysteine s-methyltransferase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	234272440	234274678	-	Ag5G02028

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.61	35,747.29 Da	33.09	90.40	-0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02574	Homocysteine S-methyltransferase	22	322	9.5E-75	IPR003726
SUPERFAMILY	SSF82282	Homocysteine S-methyltransferase	17	325	4.45E-81	IPR036589
Gene3D	G3DSA:3.20.20.330	-	8	322	4.0E-99	IPR036589
PIRSF	PIRSF037505	BHMT	278	326	1.6	IPR017226
PIRSF	PIRSF037505	BHMT	8	263	4.8E-9	IPR017226
ProSiteProfiles	PS50970	Homocysteine-binding domain profile.	9	323	48.817383	IPR003726

Gene Ontology

Biological Process:

GO:0009086 (methionine biosynthetic process)

Molecular Function:

GO:0008270 (zinc ion binding) GO:0047150 (betaine-homocysteine S-methyltransferase activity)

KEGG Pathway

KO Term:

K00547 (homocysteine S-methyltransferase [EC:2.1.1.10])

Pathway:

ko00270 (Cysteine and methionine metabolism) map00270 (Cysteine and methionine metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Reaction:

R00650 (S-Adenosyl-L-methionine + L-Homocysteine <=> S-Adenosyl-L-homocysteine + L-Methionine)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G25900.1	Homocysteine S-methyltransferase family protein.
RefSeq	XP_017219279.1	PREDICTED: homocysteine S-methyltransferase 1-like [Daucus carota subsp. sativus]
Swiss-Prot	A4ZGQ8	Homocysteine S-methyltransferase 1 OS=Brassica oleracea var. italica OX=36774 GN=HMT1 PE=1 SV=1
TrEMBL	A0A164SRG1	Hcy-binding domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023660 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	53.294563	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	13.550366	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	27.410908	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	40.779613	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	46.270386	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	8.082615	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.556005	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	1.99949	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	4.996066	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	6.259789	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	5.842516	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	3.444513	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	5.511529	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	4.294519	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	26.016275	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	36.719311	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	18.866417	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	8.818816	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	15.46592	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	21.223269	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	10.583393	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	36.022552	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	40.969105	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	39.411602	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	29.845882	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	23.787064	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	18.426012	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	9.725254	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	15.602533	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.219576		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.585869		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.115856		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	2.023254		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	18.530428		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.565962		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.557703		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.318484		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	4.255727	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	3.023477	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.874375	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	69.785362	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	13.703698	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.197848	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.119287	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	31.941601	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	6.015224	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	18.402475	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	21.253935	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	31.257944	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg27872, jg34936, jg8775
Aizoaceae	Mesembryanthemum crystallinum	2	gene_18455, gene_19378
Amaranthaceae	Atriplex hortensis	2	Ah000340, Ah025809
Amaranthaceae	Beta vulgaris	3	BVRB_5g119700, BVRB_6g141850, BVRB_6g141890
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg13844, Sbi_jg13880, Sbi_jg30758, Sbi_jg52077 ... Sbi_jg58501
Amaranthaceae	Salicornia europaea	2	Seu_jg28374, Seu_jg9768
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004946, GOSA_00028751
Amaranthaceae	Suaeda glauca	4	Sgl34411, Sgl39821, Sgl53774, Sgl59038
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000003682, gene:ENSEOMG00000003959 ... gene:ENSEOMG00000007419, gene:ENSEOMG00000022836, gene:ENSEOMG00000023562, gene:ENSEOMG00000026173
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0025100, CQ.Regalona.r1.5BG0026600 ... CQ.Regalona.r1.6AG0014590, CQ.Regalona.r1.6BG0015270
Anacardiaceae	Pistacia vera	3	pistato.v30026840, pistato.v30225400, pistato.v30236380
Apiaceae	Apium graveolens	3	Ag1G01842, Ag5G02028, Ag9G02124
Arecaceae	Cocos nucifera	3	COCNU_02G005220, COCNU_03G001340, COCNU_06G015720
Arecaceae	Phoenix dactylifera	3	gene-LOC103711353, gene-LOC103716281, gene-LOC103718093
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.1550.V1.1, AsparagusV1_03.526.V1.1 ... AsparagusV1_08.2236.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G13166, Ftri12G21440, Ftri5G28153
Brassicaceae	Arabidopsis thaliana	3	AT3G22740.1, AT3G25900.1, AT3G63250.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10004584m.g.v1.0, Thhalv10006074m.g.v1.0 ... Thhalv10021051m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g15140.v2.2, Sp3g20460.v2.2, Sp5g00280.v2.2
Brassicaceae	Brassica nigra	4	BniB01g039780.2N, BniB02g066520.2N, BniB06g061110.2N ... BniB08g076720.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G2067, Ceq07G0326
Casuarinaceae	Casuarina glauca	2	Cgl03G2206, Cgl07G0333
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno09g02630, gene.Cymno15g05560
Dunaliellaceae	Dunaliella salina	1	Dusal.0343s00005.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g40470, gene.Thate08g10640, gene.Thate09g21320
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-4988
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.547, evm.TU.LG04.1122, evm.TU.LG11.994
Plantaginaceae	Plantago ovata	2	Pov_00008008, Pov_00019266
Plumbaginaceae	Limonium bicolor	5	Lb0G37672, Lb1G01526, Lb1G01534, Lb1G06615, Lb5G29223
Poaceae	Echinochloa crus-galli	10	AH01.4497, AH02.3438, AH05.4002, BH02.3530, BH05.4099 ... CH01.5115, CH02.3060, CH02.3279, CH05.4316, Contig192.136
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0035170, gene-QOZ80_1BG0085260 ... gene-QOZ80_3AG0239150, gene-QOZ80_3BG0288840, gene-QOZ80_5AG0397290, gene-QOZ80_5BG0445800
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0292600.1, HORVU.MOREX.r3.4HG0395940.1 ... HORVU.MOREX.r3.5HG0431780.1
Poaceae	Lolium multiflorum	6	gene-QYE76_000790, gene-QYE76_000832, gene-QYE76_000836 ... gene-QYE76_042498, gene-QYE76_056201, gene-QYE76_069716
Poaceae	Oryza coarctata	8	Oco01G021540, Oco02G022040, Oco05G006740, Oco06G006930 ... Oco19G004490, Oco20G004460, Oco23G010110, Oco24G009870
Poaceae	Oryza sativa	4	LOC_Os01g56610.1, LOC_Os03g12110.1, LOC_Os10g28630.1 ... LOC_Os12g41390.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G435000, gene-BS78_08G139500
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0101795, Pt_Chr0104179, Pt_Chr0601554, Pt_Chr0601585
Poaceae	Sporobolus alterniflorus	6	Chr01G027650, Chr04G018750, Chr06G019620, Chr12G011750 ... Chr19G007890, Chr27G008770
Poaceae	Thinopyrum elongatum	3	Tel3E01G504400, Tel4E01G414500, Tel5E01G117400
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG045400, gene_TRIDC3BG051520 ... gene_TRIDC4AG008590, gene_TRIDC4BG042550, gene_TRIDC5AG008130, gene_TRIDC5BG010410
Poaceae	Triticum aestivum	9	TraesCS3A02G322600.1, TraesCS3B02G343000.1 ... TraesCS3D02G308900.1, TraesCS4A02G065100.1, TraesCS4B02G242700.1, TraesCS4D02G242100.1, TraesCS5A02G053100.1, TraesCS5B02G063300.1, TraesCS5D02G064400.1
Poaceae	Zea mays	4	Zm00001eb031360_P001, Zm00001eb135800_P002 ... Zm00001eb151780_P001, Zm00001eb399940_P001
Poaceae	Zoysia japonica	3	nbis-gene-11785, nbis-gene-2447, nbis-gene-47548
Poaceae	Zoysia macrostachya	2	Zma_g1762, Zma_g26101
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.1102, evm.TU.LG03.1977, evm.TU.LG06.1788 ... evm.TU.LG09.874, evm.TU.LG11.1141, evm.TU.LG14.274
Posidoniaceae	Posidonia oceanica	2	gene.Posoc07g09920, gene.Posoc08g00580
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_15_RagTag.81, evm.TU.Scaffold_9_RagTag.937
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-1498, nbisL1-mrna-1504, nbisL1-mrna-21272
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-18085, nbisL1-mrna-2976
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-17425, nbisL1-mrna-18375
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000001l.47, evm.TU.utg000003l.512
Rhizophoraceae	Kandelia obovata	2	Maker00004650, Maker00009283
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-11675, nbisL1-mrna-1499
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-2848, nbisL1-mrna-5119
Salicaceae	Populus euphratica	5	populus_peu07412, populus_peu15073, populus_peu21028 ... populus_peu21423, populus_peu32737
Solanaceae	Lycium barbarum	2	gene-LOC132609295, gene-LOC132610829
Solanaceae	Solanum chilense	1	SOLCI002373400
Solanaceae	Solanum pennellii	2	gene-LOC107029752, gene-LOC107031665
Tamaricaceae	Reaumuria soongarica	3	STRG.16866_chr09_+, gene_11029, gene_8441
Tamaricaceae	Tamarix chinensis	3	TC04G0169, TC07G2657, TC12G1367
Zosteraceae	Zostera marina	1	Zosma02g16710.v3.1