Basic Information
Locus ID:
Ag5G01977
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
ALG-2 interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 226980618 | 226995706 | - | Ag5G01977 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 100,997.70 Da | 63.49 | 74.52 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09246 | BRO1_Alix_like_1 | 15 | 372 | 1.99488E-163 | - |
| CDD | cd09238 | V_Alix_like_1 | 378 | 714 | 1.7251E-179 | - |
| Pfam | PF03097 | BRO1-like domain | 15 | 395 | 1.0E-104 | IPR004328 |
| Pfam | PF13949 | ALIX V-shaped domain binding to HIV | 432 | 716 | 4.3E-71 | IPR025304 |
| Gene3D | G3DSA:1.20.120.560 | alix/aip1 in complex with the ypdl late domain | 378 | 656 | 7.5E-69 | - |
| Gene3D | G3DSA:1.20.140.50 | alix/aip1 like domains | 424 | 705 | 7.5E-69 | - |
| Gene3D | G3DSA:1.25.40.280 | alix/aip1 like domains | 10 | 377 | 1.4E-101 | IPR038499 |
| SMART | SM01041 | BRO1_2 | 14 | 400 | 2.7E-111 | IPR004328 |
| ProSiteProfiles | PS51180 | BRO1 domain profile. | 14 | 409 | 44.670483 | IPR004328 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 781 | 809 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 874 | 892 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 827 | 851 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 749 | 773 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 810 | 826 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 749 | 899 | - | - |
| Coils | Coil | Coil | 665 | 685 | - | - |
| Coils | Coil | Coil | 38 | 65 | - | - |
| Coils | Coil | Coil | 628 | 648 | - | - |
| Coils | Coil | Coil | 579 | 599 | - | - |
| Coils | Coil | Coil | 504 | 524 | - | - |
| Coils | Coil | Coil | 452 | 479 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15130.1 | Endosomal targeting BRO1-like domain-containing protein. | 0 |
| RefSeq | XP_017218412.1 | PREDICTED: ALG-2 interacting protein X [Daucus carota subsp. sativus] | 0 |
| F4HXZ1 | Vacuolar-sorting protein BRO1 OS=Arabidopsis thaliana OX=3702 GN=BRO1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164SQJ6 | BRO1 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023618 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 58.536854 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 46.512669 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 32.44342 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 33.979542 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 35.933479 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 33.722168 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 36.565861 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 33.225445 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 41.25386 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 40.030094 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 39.271557 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 41.096729 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 40.490944 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 36.66301 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 26.945366 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 35.891605 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 27.886173 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 42.906944 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 31.638517 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 41.962826 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 46.775764 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 33.612755 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 39.101528 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 35.121998 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 32.878582 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 42.052277 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 34.462704 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 33.65818 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 39.023533 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.509939 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 12.228679 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.904497 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 32.378929 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 23.494837 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 60.680393 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 24.724306 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.763993 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 18.613764 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 31.769171 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 17.197962 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.960506 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 62.160172 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 48.352039 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 44.405544 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 43.216492 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 60.124054 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 41.350204 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 45.447716 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 40.534817 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 41.374722 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg34989, jg5208 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18544 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025429 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g079130, BVRB_6g142900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12893, Sbi_jg52977 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8880 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026027 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl32907, Sgl38229 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000021, gene:ENSEOMG00000000765 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0013030, CQ.Regalona.r1.6BG0013400 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30216170, pistato.v30216530 |
| Apiaceae | Apium graveolens | 1 | Ag5G01977 |
| Arecaceae | Cocos nucifera | 3 | COCNU_03G009070, scaffold004352G000040 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696398, gene-LOC103719274 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1198.V1.1, AsparagusV1_10.913.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G27631, Ftri5G33241 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G15130.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006787m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g13470.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g026060.2N, BniB06g040470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G2080 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G2279 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g11440, gene.Cymno10g06430 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0207s00011.v1.0, Dusal.0241s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g37890, gene.Thate08g14090 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1439 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00023096, Pov_00026898 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G02060, Lb1G02864, Lb2G13273 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1716, BH01.1916, CH01.2022 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0112280, gene-QOZ80_2BG0165670 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0045890.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011767 |
| Poaceae | Oryza coarctata | 2 | Oco19G007010, Oco20G006950 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g67080.1, LOC_Os10g35250.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G189300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0502737, Pt_Chr0502794 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G030300, Chr09G001820, Chr15G021650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G299700 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG025150, gene_TRIDC1AG026670 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS1A02G164000.1, TraesCS1A02G174400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb044760_P001, Zm00001eb221160_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45316 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12684 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.778, evm.TU.LG21.455 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g05340, gene.Posoc06g16700 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_15_RagTag.147, evm.TU.Scaffold_17_RagTag.855 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23566 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20465 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21995 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.475 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004436 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10868 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14185 |
| Salicaceae | Populus euphratica | 2 | populus_peu07131, populus_peu07132 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615978, gene-LOC132641649 |
| Solanaceae | Solanum chilense | 2 | SOLCI004454100, SOLCI005485900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107017929, gene-LOC107020598 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12753_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0685 |
| Zosteraceae | Zostera marina | 2 | Zosma03g29670.v3.1, Zosma06g22940.v3.1 |