halophFGD

Basic Information

Locus ID: Ag5G01885

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Inactive leucine-rich repeat receptor-like serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	216551911	216556156	-	Ag5G01885

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.46	71,643.34 Da	42.18	90.31	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	352	616	4.6E-36	IPR000719
Pfam	PF00560	Leucine Rich Repeat	184	200	1.9	IPR001611
Pfam	PF08263	Leucine rich repeat N-terminal domain	27	58	2.4E-5	IPR013210
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	353	628	4.05E-57	IPR011009
SUPERFAMILY	SSF52058	L domain-like	35	210	7.18E-29	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	335	424	6.3E-17	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	425	642	1.5E-45	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	181	230	3.0E-8	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	25	180	1.3E-33	IPR032675
ProSiteProfiles	PS50011	Protein kinase domain profile.	349	623	33.71455	IPR000719
MobiDBLite	mobidb-lite	consensus disorder prediction	565	586	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	287	313	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	625	654	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G10850.1	Leucine-rich repeat protein kinase family protein.
RefSeq	XP_017215719.1	PREDICTED: inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 [Daucus carota subsp. sativus]
Swiss-Prot	Q84MA9	Inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 OS=Arabidopsis thaliana OX=3702 GN=At1g60630 PE=2 SV=1
TrEMBL	A0A164SNA7	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023505 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	5.610661	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	6.200968	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	3.063843	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.425004	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	3.252981	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.770597	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	5.794199	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	3.454845	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	22.208941	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	25.973772	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	29.37409	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	28.175066	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	25.91675	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	26.077393	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	14.165886	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	17.612762	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	14.069477	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	8.229568	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	8.729696	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	10.836845	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	6.328622	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	8.45363	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	7.075555	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	8.340799	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	8.925079	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	12.625728	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	8.968572	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	5.83602	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	12.231937	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.689243		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.902456		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.777211		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	2.04089		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	10.882205		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	4.701494		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.619728		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.066874		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.899397		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	11.286616	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	3.274543	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.797193	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.524058	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.278581	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.203193	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.096039	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.156765	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.204665	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	23.799406	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	18.804283	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	21.294487	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg5070, jg7417, jg9723
Aizoaceae	Mesembryanthemum crystallinum	1	gene_25874
Amaranthaceae	Atriplex hortensis	1	Ah037308
Amaranthaceae	Beta vulgaris	1	BVRB_9g206650
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg11827, Sbi_jg46585
Amaranthaceae	Salicornia europaea	1	Seu_jg21062
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00021040
Amaranthaceae	Suaeda glauca	1	Sgl68917
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000015662, gene:ENSEOMG00000039143 ... gene:ENSEOMG00000052804
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.9AG0007430, CQ.Regalona.r1.9BG0014590
Anacardiaceae	Pistacia vera	1	pistato.v30219790
Apiaceae	Apium graveolens	3	Ag3G00483, Ag5G01885, Ag8G01936
Arecaceae	Cocos nucifera	2	COCNU_08G009420, COCNU_09G006110
Arecaceae	Phoenix dactylifera	2	gene-LOC103723877, gene-LOC120104244
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.1015.V1.1
Asteraceae	Flaveria trinervia	2	Ftri13G15674, Ftri3G22077
Brassicaceae	Arabidopsis thaliana	2	AT1G10850.1, AT1G60630.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10007013m.g.v1.0, Thhalv10023334m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g09550.v2.2, Sp2g04090.v2.2
Brassicaceae	Brassica nigra	3	BniB02g059740.2N, BniB04g028780.2N, BniB07g046550.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq07G1617
Casuarinaceae	Casuarina glauca	1	Cgl07G1740
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno14g07920
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate08g16650
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-5561
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG03.969
Plantaginaceae	Plantago ovata	1	Pov_00025303
Plumbaginaceae	Limonium bicolor	2	Lb6G31304, Lb7G34112
Poaceae	Echinochloa crus-galli	3	AH07.4043, BH07.3857, CH07.3922
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_2AG0151610, gene-QOZ80_2BG0206980
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.6HG0633560.1
Poaceae	Lolium multiflorum	1	gene-QYE76_056870
Poaceae	Oryza coarctata	2	Oco03G026210, Oco04G026630
Poaceae	Oryza sativa	1	LOC_Os02g58390.1
Poaceae	Paspalum vaginatum	1	gene-BS78_04G329600
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0600008, Pt_Chr0600021
Poaceae	Sporobolus alterniflorus	2	Chr09G026930, Chr13G000220
Poaceae	Thinopyrum elongatum	1	Tel6E01G776200
Poaceae	Triticum dicoccoides	2	gene_TRIDC6AG061200, gene_TRIDC6BG071310
Poaceae	Triticum aestivum	3	TraesCS6A02G417300.1, TraesCS6B02G472100.1 ... TraesCS6D02G402600.1
Poaceae	Zea mays	1	Zm00001eb259460_P001
Poaceae	Zoysia japonica	1	nbis-gene-39736
Poaceae	Zoysia macrostachya	1	Zma_g17480
Portulacaceae	Portulaca oleracea	2	evm.TU.LG02.2217, evm.TU.LG23.449
Posidoniaceae	Posidonia oceanica	1	gene.Posoc06g14350
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_17_RagTag.694
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-23380
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14188
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-20013
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000013l.372
Rhizophoraceae	Kandelia obovata	1	Maker00004479
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-10766
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-14353
Salicaceae	Populus euphratica	2	populus_peu07306, populus_peu21299
Solanaceae	Lycium barbarum	1	gene-LOC132614727
Solanaceae	Solanum chilense	1	SOLCI006296400
Solanaceae	Solanum pennellii	1	gene-LOC107017961
Tamaricaceae	Reaumuria soongarica	1	STRG.683_chr01_-
Tamaricaceae	Tamarix chinensis	1	TC07G0014
Zosteraceae	Zostera marina	1	Zosma05g30870.v3.1