halophFGD

Basic Information

Locus ID: Ag5G01879

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	215738494	215752437	-	Ag5G01879

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.44	88,563.72 Da	38.74	78.62	-0.36

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	10	265	2.58034E-66	-
Pfam	PF00400	WD domain, G-beta repeat	136	173	9.9E-11	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	93	130	1.4E-6	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	177	215	5.7E-9	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	10	45	0.014	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	52	88	7.7E-4	IPR001680
Pfam	PF13925	con80 domain of Katanin	650	807	1.6E-50	IPR028021
SUPERFAMILY	SSF50978	WD40 repeat-like	7	275	2.11E-69	IPR036322
Gene3D	G3DSA:2.130.10.10	-	196	352	6.2E-13	IPR015943
Gene3D	G3DSA:2.130.10.10	-	2	195	7.3E-58	IPR015943
SMART	SM00320	WD40_4	134	173	1.6E-12	IPR001680
SMART	SM00320	WD40_4	91	130	5.9E-9	IPR001680
SMART	SM00320	WD40_4	176	215	2.3E-11	IPR001680
SMART	SM00320	WD40_4	218	256	5.6	IPR001680
SMART	SM00320	WD40_4	49	88	1.9E-4	IPR001680
SMART	SM00320	WD40_4	6	46	0.012	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	56	97	10.363778	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	56	97	14.117617	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	183	218	13.290127	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	141	182	17.760201	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	98	132	13.783434	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	183	224	16.724236	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	13	55	10.274523	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	98	132	11.418318	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	141	178	13.632853	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	160	174	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	202	216	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	202	216	1.5E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	117	131	1.5E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	160	174	1.5E-7	IPR020472
Hamap	MF_03022	Katanin p80 WD40 repeat-containing subunit B1 [KATNB1].	2	811	20.094992	IPR026962
MobiDBLite	mobidb-lite	consensus disorder prediction	317	351	-	-

Gene Ontology

Biological Process:

GO:0051013 (microtubule severing)

Molecular Function:

GO:0005515 (protein binding) GO:0008017 (microtubule binding)

Cellular Component:

GO:0008352 (katanin complex)

KEGG Pathway

KO Term:

K18643 (katanin p80 WD40 repeat-containing subunit B1)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G23430.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_017216836.1	PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog [Daucus carota subsp. sativus]
Swiss-Prot	Q8H0T9	Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 OS=Arabidopsis thaliana OX=3702 GN=KTN80.4 PE=1 SV=3
TrEMBL	A0A175YQ22	Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_026869 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	1.745376	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.89061	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	1.754574	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.162184	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.675508	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.07611	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.205002	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.470283	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	6.450325	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	7.916716	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	7.310279	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	6.479863	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	5.036931	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	5.572915	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	4.82011	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	5.757461	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	5.913569	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	10.44989	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	9.100421	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	7.553672	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	8.446923	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	10.160845	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	10.780792	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	9.484373	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	7.570251	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	12.547125	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	12.000496	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	5.701611	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	12.482285	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.249542		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	1.803885		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	1.587173		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.758814		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.889359		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.639034		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.710297		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.621515		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.457633		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	4.928149	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.856047	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.199385	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.668245	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	3.82075	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	10.936279	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	13.355952	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.774482	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	19.33074	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	16.278778	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	15.758883	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	15.301866	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg20304, jg22035, jg5079
Aizoaceae	Mesembryanthemum crystallinum	2	gene_22289, gene_25334
Amaranthaceae	Atriplex hortensis	4	Ah017931, Ah024700, Ah038645, Ah038646
Amaranthaceae	Beta vulgaris	1	BVRB_9g202260
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg10176, Sbi_jg14659, Sbi_jg26388, Sbi_jg55416
Amaranthaceae	Salicornia europaea	2	Seu_jg22253, Seu_jg25981
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00014013, GOSA_00023970
Amaranthaceae	Suaeda glauca	6	Sgl45799, Sgl45800, Sgl45839, Sgl50534, Sgl78017, Sgl80522
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000009427, gene:ENSEOMG00000011078 ... gene:ENSEOMG00000027532, gene:ENSEOMG00000031772, gene:ENSEOMG00000035988, gene:ENSEOMG00000041313, gene:ENSEOMG00000044088
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.2AG0005330, CQ.Regalona.r1.4AG0017400 ... CQ.Regalona.r1.4BG0017810, CQ.Regalona.r1.8AG0004330, CQ.Regalona.r1.8BG0004650
Anacardiaceae	Pistacia vera	2	pistato.v30092450, pistato.v30212810
Apiaceae	Apium graveolens	2	Ag5G01879, Ag8G01941
Arecaceae	Cocos nucifera	4	COCNU_08G009940, COCNU_09G006950, COCNU_14G006400 ... scaffold000040G000080
Arecaceae	Phoenix dactylifera	4	gene-LOC103696578, gene-LOC103698051, gene-LOC103714616 ... gene-LOC103716371
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.2222.V1.1, AsparagusV1_07.2138.V1.1
Asteraceae	Flaveria trinervia	3	Ftri13G03933, Ftri15G01385, Ftri5G14987
Brassicaceae	Arabidopsis thaliana	4	AT1G11160.1, AT1G61210.1, AT5G08390.1, AT5G23430.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10005394m.g.v1.0, Thhalv10006699m.g.v1.0 ... Thhalv10012683m.g.v1.0, Thhalv10023227m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g09830.v2.2, Sp2g03270.v2.2, Sp2g23730.v2.2 ... Sp6g34550.v2.2
Brassicaceae	Brassica nigra	5	BniB02g006050.2N, BniB02g076620.2N, BniB07g040740.2N ... BniB07g047230.2N, BniB08g003770.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G2447, Ceq03G1985
Casuarinaceae	Casuarina glauca	2	Cgl01G2704, Cgl03G2131
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno13g00050, gene.Cymno14g02460
Dunaliellaceae	Dunaliella salina	1	Dusal.0028s00016.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate03g12440, gene.Thate05g28660, gene.Thate07g10040 ... gene.Thate08g00910
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-11052, nbisL1-mrna-3850, nbisL1-mrna-9404
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.1584, evm.TU.LG12.1006
Plantaginaceae	Plantago ovata	2	Pov_00005719, Pov_00027678
Plumbaginaceae	Limonium bicolor	5	Lb2G15301, Lb3G20755, Lb4G24638, Lb4G24640, Lb6G30412
Poaceae	Echinochloa crus-galli	10	AH01.1718, AH02.3487, AH09.2712, BH01.1919, BH02.3470 ... BH02.3505, BH09.2952, CH01.2180, CH02.3010, CH09.3250
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_1AG0035730, gene-QOZ80_1BG0085760 ... gene-QOZ80_2AG0112260, gene-QOZ80_4AG0299350, gene-QOZ80_4BG0330040
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0045950.1, HORVU.MOREX.r3.2HG0209810.1 ... HORVU.MOREX.r3.3HG0293550.1
Poaceae	Lolium multiflorum	3	gene-QYE76_011771, gene-QYE76_047525, gene-QYE76_056127
Poaceae	Oryza coarctata	6	Oco01G021880, Oco02G022450, Oco07G019300, Oco08G018570 ... Oco19G006970, Oco20G006920
Poaceae	Oryza sativa	4	LOC_Os01g34680.1, LOC_Os01g57210.1, LOC_Os04g58130.1 ... LOC_Os10g35200.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G189600, gene-BS78_03G296900 ... gene-BS78_06G284100
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0300098, Pt_Chr0300135, Pt_Chr0502734, Pt_Chr0502789 ... Pt_Chr0601626
Poaceae	Sporobolus alterniflorus	9	Chr02G007960, Chr03G017620, Chr05G025550, Chr08G024140 ... Chr15G021670, Chr23G000850, Chr25G000650, Chr26G018430, Chr30G000690
Poaceae	Thinopyrum elongatum	3	Tel1E01G300100, Tel2E01G962200, Tel3E01G512000
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG025210, gene_TRIDC1BG030250 ... gene_TRIDC2AG077500, gene_TRIDC2BG085680, gene_TRIDC3AG046170, gene_TRIDC3BG052490
Poaceae	Triticum aestivum	10	TraesCS1A02G164300.1, TraesCS1B02G181100.1 ... TraesCS1D02G151100.1, TraesCS1D02G161300.1, TraesCS2A02G592600.1, TraesCS2B02G591600.2, TraesCS2D02G561900.1, TraesCS3A02G317500.1, TraesCS3B02G349000.2, TraesCS3D02G313800.1
Poaceae	Zea mays	5	Zm00001eb044790_P002, Zm00001eb066150_P001 ... Zm00001eb283500_P001, Zm00001eb369860_P004, Zm00001eb433770_P001
Poaceae	Zoysia japonica	3	nbis-gene-11745, nbis-gene-23209, nbis-gene-6199
Poaceae	Zoysia macrostachya	4	Zma_g11280, Zma_g20696, Zma_g22228, Zma_g8778
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.1606, evm.TU.LG01.1668, evm.TU.LG02.2342 ... evm.TU.LG14.854, evm.TU.LG14.894, evm.TU.LG23.577
Posidoniaceae	Posidonia oceanica	2	gene.Posoc06g04090, gene.Posoc10g00150
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.60431.1, evm.TU.60432.1, evm.TU.Scaffold_15_RagTag.2
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-23809, nbisL1-mrna-26286
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-12115, nbisL1-mrna-9155
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-17357, nbisL1-mrna-21620
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000001l.1, evm.TU.utg000027l.100
Rhizophoraceae	Kandelia obovata	2	Maker00004589, Maker00017476
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-10653, nbisL1-mrna-11719
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-23919, nbisL1-mrna-2922
Salicaceae	Populus euphratica	3	populus_peu05933, populus_peu18245, populus_peu19797
Solanaceae	Lycium barbarum	3	gene-LOC132613553, gene-LOC132621242, gene-LOC132621419
Solanaceae	Solanum chilense	3	SOLCI001186500, SOLCI004632600, SOLCI006635800
Solanaceae	Solanum pennellii	3	gene-LOC107011271, gene-LOC107011518, gene-LOC107015576
Tamaricaceae	Reaumuria soongarica	2	STRG.8204_chr05_-, gene_16689
Tamaricaceae	Tamarix chinensis	2	TC01G2388, TC07G1248
Zosteraceae	Zostera marina	2	Zosma01g35090.v3.1, Zosma03g28400.v3.1