halophFGD

Basic Information

Locus ID: Ag5G01877

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: WD repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	215701686	215705999	+	Ag5G01877

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.06	64,607.05 Da	45.17	93.96	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	261	553	2.09602E-48	-
Pfam	PF00400	WD domain, G-beta repeat	260	295	4.6E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	473	510	0.0066	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	516	553	2.2E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	306	341	0.036	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	345	383	0.042	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	255	553	1.91E-64	IPR036322
Gene3D	G3DSA:2.130.10.10	-	235	485	3.2E-42	IPR015943
Gene3D	G3DSA:2.130.10.10	-	486	571	1.1E-20	IPR015943
SMART	SM00320	WD40_4	302	341	1.0E-5	IPR001680
SMART	SM00320	WD40_4	257	296	1.2E-7	IPR001680
SMART	SM00320	WD40_4	427	465	60.0	IPR001680
SMART	SM00320	WD40_4	385	425	69.0	IPR001680
SMART	SM00320	WD40_4	514	554	3.3E-12	IPR001680
SMART	SM00320	WD40_4	469	511	1.6	IPR001680
SMART	SM00320	WD40_4	344	383	0.046	IPR001680
SMART	SM00668	ctlh	92	149	0.0032	IPR006595
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	521	563	13.816853	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	521	557	11.286501	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	309	346	11.840134	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	309	350	15.454345	IPR001680
ProSiteProfiles	PS50896	LIS1 homology (LisH) motif profile.	59	91	8.26309	IPR006594
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	264	305	12.847725	IPR001680
ProSiteProfiles	PS50897	C-terminal to LisH (CTLH) motif profile.	92	149	9.246587	IPR006595
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	264	298	10.548323	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	283	297	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	370	384	6.6E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	283	297	6.6E-6	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	541	555	6.6E-6	IPR020472

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K22382 (WD repeat-containing protein 26)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G08560.1	transducin family protein / WD-40 repeat family protein.
RefSeq	XP_017215494.1	PREDICTED: WD repeat-containing protein 26 [Daucus carota subsp. sativus]
Swiss-Prot	Q9FNN2	WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1
TrEMBL	A0A161X215	WD repeat-containing protein 26 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023497 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	6.641143	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	5.603832	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	9.258002	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	7.403177	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	8.727372	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	6.98193	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	5.995717	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	3.838316	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	17.670698	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	16.272362	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	18.131544	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	23.644621	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	15.88547	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	14.860929	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	13.975707	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	17.407452	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	19.033428	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	12.488051	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	13.254398	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	9.046561	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	10.801723	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	20.334299	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	19.103067	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	17.245974	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	15.860503	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	17.210876	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	16.140415	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	15.164396	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	18.495665	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	2.550796		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	5.094932		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	5.604127		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	4.373156		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	12.252707		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	4.64002		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	2.57561		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.487475		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.757942		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	10.189084	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	4.685241	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	3.723614	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.165544	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	5.527723	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	11.195117	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	11.234358	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	2.722396	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	16.814001	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	20.202839	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	18.747984	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	12.738771	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg16228, jg19040, jg19043, jg19045, jg19048, jg24101 ... jg37461
Aizoaceae	Mesembryanthemum crystallinum	2	gene_17794, gene_5317
Amaranthaceae	Atriplex hortensis	4	Ah027031, Ah029123, Ah037565, Ah037594
Amaranthaceae	Beta vulgaris	2	BVRB_6g132130, BVRB_7g166270
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg13522, Sbi_jg52363, Sbi_jg59153, Sbi_jg63483
Amaranthaceae	Salicornia europaea	2	Seu_jg23419, Seu_jg9489
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00023186, GOSA_00023187, GOSA_00023189, GOSA_00023377 ... GOSA_00023378, GOSA_00029520
Amaranthaceae	Suaeda glauca	4	Sgl33515, Sgl38864, Sgl72428, Sgl75977
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000001394, gene:ENSEOMG00000003013 ... gene:ENSEOMG00000007855, gene:ENSEOMG00000026627, gene:ENSEOMG00000036103, gene:ENSEOMG00000040929, gene:ENSEOMG00000052547
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.6AG0021550, CQ.Regalona.r1.6BG0022730 ... CQ.Regalona.r1.7AG0011230, CQ.Regalona.r1.7BG0013400, CQ.Regalona.r1.9AG0000100, CQ.Regalona.r1.9BG0022010
Anacardiaceae	Pistacia vera	8	pistato.v30013160, pistato.v30015190, pistato.v30201810 ... pistato.v30201820, pistato.v30202660, pistato.v30202690, pistato.v30202700, pistato.v30212900
Apiaceae	Apium graveolens	4	Ag10G00843, Ag1G01685, Ag5G01877, Ag8G01943
Arecaceae	Cocos nucifera	6	COCNU_01G015670, COCNU_07G009010, scaffold002739G000010 ... scaffold009168G000010, scaffold009168G000020, scaffold013376G000010
Arecaceae	Phoenix dactylifera	4	gene-LOC103695548, gene-LOC103696220, gene-LOC103707677 ... gene-LOC103722740
Asparagaceae	Asparagus officinalis	5	AsparagusV1_03.613.V1.1, AsparagusV1_06.39.V1.1 ... AsparagusV1_08.2950.V1.1, AsparagusV1_10.1880.V1.1, AsparagusV1_10.1881.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G28836, Ftri13G11884, Ftri3G21437
Brassicaceae	Arabidopsis thaliana	2	AT5G08560.1, AT5G43920.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10003179m.g.v1.0, Thhalv10013060m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g08740.v2.2, Sp2g26750.v2.2, Sp6g34330.v2.2
Brassicaceae	Brassica nigra	5	BniB02g052620.2N, BniB04g001790.2N, BniB04g017400.2N ... BniB06g011980.2N, BniB08g003910.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G2175, Ceq03G1989, Ceq06G2280
Casuarinaceae	Casuarina glauca	3	Cgl02G2252, Cgl03G2137, Cgl06G2390
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno11g11340
Dunaliellaceae	Dunaliella salina	1	Dusal.1069s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g03360
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-10267, nbisL1-mrna-2193, nbisL1-mrna-6802
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG03.1576, evm.TU.LG03.2506
Plantaginaceae	Plantago ovata	2	Pov_00001348, Pov_00024562
Plumbaginaceae	Limonium bicolor	3	Lb3G20752, Lb5G28636, Lb6G30403
Poaceae	Echinochloa crus-galli	6	AH01.1833, AH08.230, BH01.2128, BH08.214, CH01.2246 ... CH08.251
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0127160, gene-QOZ80_2BG0182650 ... gene-QOZ80_8AG0616230, gene-QOZ80_8BG0643740
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0040900.1, HORVU.MOREX.r3.5HG0440360.2 ... HORVU.MOREX.r3.7HG0702990.1
Poaceae	Lolium multiflorum	4	gene-QYE76_001411, gene-QYE76_011398, gene-QYE76_033585 ... gene-QYE76_033586
Poaceae	Oryza coarctata	4	Oco03G008170, Oco04G008570, Oco19G005600, Oco20G005520
Poaceae	Oryza sativa	2	LOC_Os02g19210.1, LOC_Os10g32770.2
Poaceae	Paspalum vaginatum	2	gene-BS78_01G211600, gene-BS78_07G032000
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0402545, Pt_Chr0502527, Pt_Chr0704050, Pt_Chr0705494
Poaceae	Sporobolus alterniflorus	8	Chr06G013250, Chr09G010480, Chr0G025840, Chr0G029730 ... Chr16G001050, Chr17G001030, Chr20G013170, Chr29G012160
Poaceae	Thinopyrum elongatum	3	Tel1E01G275500, Tel5E01G152900, Tel7E01G535200
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG022320, gene_TRIDC1BG027020 ... gene_TRIDC5AG011420, gene_TRIDC5BG013370, gene_TRIDC7AG043360, gene_TRIDC7BG034630
Poaceae	Triticum aestivum	9	TraesCS1A02G146900.1, TraesCS1B02G164700.1 ... TraesCS1D02G145000.1, TraesCS5A02G074900.1, TraesCS5B02G081300.1, TraesCS5D02G088400.1, TraesCS7A02G311000.1, TraesCS7B02G210600.1, TraesCS7D02G307300.1
Poaceae	Zea mays	3	Zm00001eb046310_P001, Zm00001eb173190_P001 ... Zm00001eb261740_P004
Poaceae	Zoysia japonica	3	nbis-gene-19262, nbis-gene-39178, nbis-gene-41486
Poaceae	Zoysia macrostachya	3	Zma_g16159, Zma_g22416, Zma_g23559
Portulacaceae	Portulaca oleracea	6	evm.TU.LG01.510, evm.TU.LG03.2384, evm.TU.LG03.2385 ... evm.TU.LG04.256, evm.TU.LG17.1428, evm.TU.LG17.1430
Posidoniaceae	Posidonia oceanica	2	gene.Posoc08g07110, gene.Posoc08g08590
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_15_RagTag.6, evm.TU.Scaffold_17_RagTag.1002 ... evm.TU.Scaffold_17_RagTag.1003, evm.TU.Scaffold_5_RagTag.1161
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-11632, nbisL1-mrna-23725, nbisL1-mrna-23726 ... nbisL1-mrna-26291
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11078, nbisL1-mrna-12120, nbisL1-mrna-6119
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-10237, nbisL1-mrna-17363, nbisL1-mrna-21879 ... nbisL1-mrna-21880
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000001l.7, evm.TU.utg000006l.421 ... evm.TU.utg000013l.560
Rhizophoraceae	Kandelia obovata	3	Maker00004520, Maker00004641, Maker00014113
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-10956, nbisL1-mrna-11715, nbisL1-mrna-9875
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-19862, nbisL1-mrna-23068, nbisL1-mrna-23069 ... nbisL1-mrna-2916
Salicaceae	Populus euphratica	6	populus_peu05939, populus_peu15013, populus_peu19808 ... populus_peu26662, populus_peu26667, populus_peu32670
Solanaceae	Lycium barbarum	4	gene-LOC132610349, gene-LOC132618795, gene-LOC132636700 ... gene-LOC132640864
Solanaceae	Solanum chilense	4	SOLCI001770700, SOLCI002039300, SOLCI003769700 ... SOLCI006669800
Solanaceae	Solanum pennellii	4	gene-LOC107005623, gene-LOC107020475, gene-LOC107025686 ... gene-LOC107029499
Tamaricaceae	Reaumuria soongarica	3	STRG.2139_chr01_+, STRG.8197_chr05_-, gene_1632
Tamaricaceae	Tamarix chinensis	3	TC01G0524, TC01G2384, TC03G1387
Zosteraceae	Zostera marina	1	Zosma06g11670.v3.1