Basic Information
Locus ID:
Ag5G01875
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
protein transport
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 215478556 | 215482544 | + | Ag5G01875 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 38,837.75 Da | 53.31 | 74.11 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 350 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08540.1 | 0 | |
| RefSeq | XP_017215859.1 | PREDICTED: uncharacterized protein LOC108193632 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164SN07 | Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023495 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 24.203176 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.114691 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 11.510382 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.118981 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.706463 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.571192 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.383799 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 9.610839 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 22.434435 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 25.05645 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.732994 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 23.933352 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 23.595579 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.332285 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 8.892659 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.189397 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 9.410793 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 20.350592 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 21.447235 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 21.402655 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 17.688738 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 12.078052 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.903204 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 16.088684 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 18.232861 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.444658 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 18.685225 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 24.136938 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 17.800825 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.918155 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 12.707444 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 10.564789 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 16.164104 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 17.699949 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 13.664527 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 11.893785 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.786276 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.786849 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 50.110718 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 22.995005 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 26.39465 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 9.881605 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.808298 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 10.717614 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.223752 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 15.876835 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.630888 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 25.663292 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.223845 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 21.573143 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5075 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25337 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038639 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g202280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14662, Sbi_jg55424 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25986 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012469 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl21324, Sgl26657, Sgl78025, Sgl80529 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015047, gene:ENSEOMG00000037654 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0000110, CQ.Regalona.r1.9BG0021990 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30212920 |
| Apiaceae | Apium graveolens | 1 | Ag5G01875 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G012850 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714791 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3495.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G17918, Ftri3G08865 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G08540.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013959m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g34350.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g052640.2N, BniB08g003880.2N, BniB08g003890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1990 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2138 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g02550 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0335s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g23350 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1575 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025306 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30461 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1659, BH09.1848, CH09.1978 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0309840, gene-QOZ80_4BG0341010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0183450.1 |
| Poaceae | Oryza coarctata | 2 | Oco07G011180, Oco08G010910 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g44560.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G166600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301992, Pt_Chr0302016 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G010200, Chr11G014880, Chr23G008250, Chr25G006800 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G646000, Tel3E01G646500, Tel5E01G679400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG054240, gene_TRIDC2BG056940 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G374600.1, TraesCS2B02G391600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb076700_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-37135, nbis-gene-5337 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20090, Zma_g21661 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2336, evm.TU.LG23.569 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g03950 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.999 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23724 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11076 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21882 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.559 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004477 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10955 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23071 |
| Salicaceae | Populus euphratica | 1 | populus_peu19803 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622323 |
| Solanaceae | Solanum chilense | 1 | SOLCI000046200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011770 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_948 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1389 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23960.v3.1 |