Basic Information
Locus ID:
Ag5G01847
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
prefoldin subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 212804625 | 212807822 | + | Ag5G01847 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 12,649.50 Da | 52.04 | 80.61 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Coils | Coil | Coil | 25 | 45 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23290.1 | prefoldin 5. | 0 |
| RefSeq | XP_017215582.1 | PREDICTED: probable prefoldin subunit 5 [Daucus carota subsp. sativus] | 0 |
| P57742 | Prefoldin subunit 5 OS=Arabidopsis thaliana OX=3702 GN=PFD5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164SME0 | Prefoldin subunit 5 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023468 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 80.088097 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 47.326466 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 40.236763 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 49.969753 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 43.768433 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 35.374092 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 40.157166 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 23.12966 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 109.87986 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 114.491585 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 110.262398 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 118.542999 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 103.538033 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 105.338943 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 64.112526 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 63.395084 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 55.474266 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 71.286346 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 57.224548 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 64.862404 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 78.887726 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 57.645943 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 54.536766 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 65.23838 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 67.222885 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 54.918983 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 62.678482 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 57.557446 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 64.218391 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 11.750473 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 14.992885 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 10.458831 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 22.045118 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 39.533604 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 22.78787 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 20.178423 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.603301 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 13.95993 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 41.21233 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 22.735676 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 15.005342 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 181.068771 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 109.950508 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 135.612289 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 94.280655 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 210.115723 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 84.240677 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 89.51709 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 63.15004 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 61.458561 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg7432 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25347 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038580 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g202690 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14689, Sbi_jg55452 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26017 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012501 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78056, Sgl80560 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015668, gene:ENSEOMG00000039031 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0000610, CQ.Regalona.r1.9AG0000720 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30225090 |
| Apiaceae | Apium graveolens | 1 | Ag5G01847 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G017290, COCNU_16G001180 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712324, gene-LOC103722102 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G05503 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G23290.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005074m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g23860.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g076520.2N, BniB07g040840.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0531 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G0553, Cgl07G0554 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g01790 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0907s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g21740 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9402 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2858 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025347 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb7G33739, Lb7G33741, Lb7G33745 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.2002, CH01.2114, Contig328.61 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0129040, gene-QOZ80_2BG0184190 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0045510.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_011622 |
| Poaceae | Oryza coarctata | 2 | Oco19G006640, Oco20G006630 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g34670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G196900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502672 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G012440, Chr09G011770, Chr13G013500, Chr15G016050 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G296000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG024960, gene_TRIDC1BG029850 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G163200.1, TraesCS1B02G179100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb045320_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21101 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13429 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1495, evm.TU.LG21.1168 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g09760 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.470 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26648 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14169 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15867 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000001l.140, evm.TU.utg000001l.242 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002446 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13849 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2544 |
| Salicaceae | Populus euphratica | 2 | populus_peu13914, populus_peu23111 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132625395 |
| Solanaceae | Solanum chilense | 1 | SOLCI007435600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009018 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7427 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0880 |
| Zosteraceae | Zostera marina | 1 | Zosma02g15020.v3.1 |