Basic Information
Locus ID:
Ag5G01845
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin ligase BIG
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 212700074 | 212704038 | - | Ag5G01845 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 35,341.03 Da | 52.33 | 60.88 | -0.97 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 269 | 309 | 1.22311E-15 | - |
| Pfam | PF13639 | Ring finger domain | 268 | 309 | 1.2E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 268 | 315 | 1.15E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 234 | 316 | 6.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 269 | 309 | 0.0019 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 269 | 310 | 11.294285 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19910.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017215740.1 | PREDICTED: E3 ubiquitin ligase BIG BROTHER-related-like [Daucus carota subsp. sativus] | 0 |
| Q9LT17 | E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana OX=3702 GN=BBR PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7C586 | Putative E3 ubiquitin ligase BIG BROTHER-related isoform X2 OS=Davidia involucrata OX=16924 GN=Din_045325 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 29.847462 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 28.923548 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 34.87254 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 37.504314 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 33.374596 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 39.866158 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 36.661255 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 35.948441 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 37.004005 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 33.466877 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 32.337643 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 34.310806 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 40.895134 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 36.875462 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 23.035686 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 24.951153 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 24.300428 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 27.496729 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 26.480961 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 30.746422 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 32.660652 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 34.357113 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 40.491909 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 34.243057 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 28.202852 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 31.772005 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 29.296783 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 26.621136 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 31.858032 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.257742 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 12.386137 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 9.817812 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 23.258514 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 24.485252 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 27.579781 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 14.173193 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.902752 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 13.640274 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 23.458839 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.774998 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 15.861211 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 73.966019 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 56.550125 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 23.863249 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 32.763515 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 73.688461 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 34.149784 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 37.436924 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 36.996769 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 32.84214 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17288, jg5048, jg7435 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11530, gene_20497 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah006467, Ah038575 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g202770 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg14690, Sbi_jg16470, Sbi_jg55453, Sbi_jg60977 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg22759, Seu_jg26018 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008085, GOSA_00012507 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl25003, Sgl30149, Sgl78065, Sgl80569 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000011941, gene:ENSEOMG00000017360 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0015250, CQ.Regalona.r1.4BG0012470 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30225020 |
| Apiaceae | Apium graveolens | 2 | Ag5G01845, Ag8G01965 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G003310, scaffold153736G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103706795, gene-LOC103711113, gene-LOC120111657 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1593.V1.1, AsparagusV1_08.464.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri4G06472, Ftri8G15610 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G19910.1, AT3G47180.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10010717m.g.v1.0, Thhalv10021098m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g17930.v2.2, Sp5g14600.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g043980.2N, BniB06g024420.2N, BniB07g050890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0536 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0559 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g01800 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g14410 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9399 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2870, evm.TU.LG06.861 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00014140, Pov_00026952 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb0G37099, Lb1G07068, Lb4G21805, Lb6G30577, Lb6G30578 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.2737, AH08.2309, BH03.2881, BH08.2447, CH03.3086 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_6AG0528190, gene-QOZ80_6BG0482190 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.5HG0494630.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031528, gene-QYE76_037518 |
| Poaceae | Oryza coarctata | 4 | Oco15G014140, Oco16G013330, Oco17G010400, Oco18G010400 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g43480.1, LOC_Os09g36460.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G255400, gene-BS78_07G219000 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0403447, Pt_Chr0700045, Pt_Chr0701016 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr10G014160, Chr11G008110, Chr14G010180, Chr16G018770 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G516600, Tel7E01G470500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG048090, gene_TRIDC5BG051890 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS5A02G325400.2, TraesCS5B02G279200.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb103610_P001, Zm00001eb202700_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-35255, nbis-gene-35256, nbis-gene-42813 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g23388, Zma_g32198 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG02.2288, evm.TU.LG16.1205, evm.TU.LG18.863 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g07060 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_15_RagTag.370, evm.TU.Scaffold_17_RagTag.653 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18718, nbisL1-mrna-26625 |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-3646, nbisL1-mrna-5568, nbisL1-mrna-7217 ... |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-13114, nbisL1-mrna-17636, nbisL1-mrna-19968 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000002l.167, evm.TU.utg000001l.221 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002380, Maker00006495 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-10764, nbisL1-mrna-13309, nbisL1-mrna-19999 |
| Rhizophoraceae | Rhizophora mangle | 5 | nbisL1-mrna-14397, nbisL1-mrna-14403, nbisL1-mrna-14408 ... |
| Salicaceae | Populus euphratica | 4 | populus_peu13921, populus_peu14760, populus_peu23119 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132621515, gene-LOC132637042, gene-LOC132638838 |
| Solanaceae | Solanum chilense | 2 | SOLCI000125600, SOLCI003662300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107006760, gene-LOC107011996 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.7046_chr04_-, gene_7426 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G1992, TC07G1558 |
| Zosteraceae | Zostera marina | 1 | Zosma05g32050.v3.1 |