Basic Information
Locus ID:
Ag5G01809
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 209136118 | 209139342 | + | Ag5G01809 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 66,554.55 Da | 43.14 | 87.90 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 200 | 432 | 2.6E-58 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 3 | 100 | 7.85E-6 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 199 | 456 | 59.706882 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 537 | - | - |
| Coils | Coil | Coil | 531 | 565 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50280.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_017216395.1 | PREDICTED: BTB/POZ domain-containing protein At1g50280 [Daucus carota subsp. sativus] | 0 |
| Q8RXR6 | BTB/POZ domain-containing protein At1g50280 OS=Arabidopsis thaliana OX=3702 GN=At1g50280 PE=2 SV=1 | 0 | |
| TrEMBL | A0A161ZHM5 | NPH3 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023436 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.567684 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.961094 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.305833 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.277137 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.707394 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.600245 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.324169 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.182838 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.107666 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 3.667656 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 3.538311 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 3.598519 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 1.584684 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.047538 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.998845 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.601353 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.511382 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.027984 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.633295 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.539884 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.118953 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.636132 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.125137 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.334773 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.001398 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.036401 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.83454 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.72887 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.508321 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.294723 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.569969 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.853788 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.627038 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.688421 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.716404 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.9347 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.557191 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.334074 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 2.708832 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.681266 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.91708 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.811708 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.847751 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.188699 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.085882 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.958193 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.451941 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.512114 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 2.660817 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.801326 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg7442 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_25410, gene_25411 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038420 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g203500 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14395, Sbi_jg53554 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg10188 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012574 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl78123 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015711, gene:ENSEOMG00000037522 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0000170, CQ.Regalona.r1.9BG0020950 |
| Apiaceae | Apium graveolens | 2 | Ag5G01809, Ag8G01993 |
| Arecaceae | Cocos nucifera | 2 | COCNU_09G006360, scaffold008549G000160 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103717133, gene-LOC103724294 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.996.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G28243 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G50280.1, AT3G19850.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011386m.g.v1.0, Thhalv10020411m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g37130.v2.2, Sp3g17860.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB07g005030.2N, BniB07g030770.2N, BniB07g050950.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0611 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0603 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g00300, gene.Cymno10g10140 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate02g00840, gene.Thate03g03090, gene.Thate05g02520 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.960 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026945 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08511 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2688, BH09.2923, CH09.3134 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0299680, gene-QOZ80_4BG0330350 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0210650.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047452 |
| Poaceae | Oryza coarctata | 2 | Oco07G019060, Oco08G018330 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g57800.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G280900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0300184 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G001080, Chr25G000830, Chr26G018210 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G944800, Tel3E01G129700 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG077250, gene_TRIDC2BG084740 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G553600.1, TraesCS2B02G585400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb066500_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23186 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.1415, evm.TU.LG21.1258 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc06g10760, gene.Posoc08g06120 |
| Salicaceae | Populus euphratica | 2 | populus_peu06712, populus_peu20598 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615341, gene-LOC132623965 |
| Solanaceae | Solanum chilense | 1 | SOLCI003358600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005146 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.26978_chr04_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2736 |
| Zosteraceae | Zostera marina | 1 | Zosma03g20990.v3.1 |