halophFGD

Basic Information

Locus ID: Ag5G01794

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: CIPK17

Description: Non-specific serine threonine protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	207733399	207736894	-	Ag5G01794

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.39	29,145.27 Da	39.20	94.31	-0.32

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd12195	CIPK_C	126	237	6.47264E-38	-
Pfam	PF00069	Protein kinase domain	22	112	2.4E-21	IPR000719
Pfam	PF03822	NAF domain	123	181	2.7E-20	IPR004041
SUPERFAMILY	SSF103243	KA1-like	153	241	1.47E-5	IPR028375
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	13	113	2.39E-28	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	10	101	6.9E-32	-
Gene3D	G3DSA:3.30.310.80	Kinase associated domain 1, KA1	121	242	2.5E-36	-
ProSiteProfiles	PS50816	NAF domain profile.	120	144	11.573581	IPR018451
ProSiteProfiles	PS50011	Protein kinase domain profile.	22	255	18.209553	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	28	51	-	IPR017441

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation) GO:0007165 (signal transduction)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K07198 (5'-AMP-activated protein kinase, catalytic alpha subunit [EC:2.7.11.31])

Pathway:

ko04068 (FoxO signaling pathway) map04068 (FoxO signaling pathway) ko04140 (Autophagy - animal) map04140 (Autophagy - animal) ko04150 (mTOR signaling pathway) map04150 (mTOR signaling pathway) ko04151 (PI3K-Akt signaling pathway) map04151 (PI3K-Akt signaling pathway) ko04152 (AMPK signaling pathway) map04152 (AMPK signaling pathway) ko04211 (Longevity regulating pathway) map04211 (Longevity regulating pathway) ko04213 (Longevity regulating pathway - multiple species) map04213 (Longevity regulating pathway - multiple species) ko04371 (Apelin signaling pathway) map04371 (Apelin signaling pathway) ko04710 (Circadian rhythm)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G17510.1	CBL-interacting protein kinase 1. Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2.
RefSeq	XP_017217652.1	PREDICTED: LOW QUALITY PROTEIN: CBL-interacting serine/threonine-protein kinase 1 [Daucus carota subsp. sativus]
Swiss-Prot	Q0D4B2	CBL-interacting protein kinase 21 OS=Oryza sativa subsp. japonica OX=39947 GN=CIPK21 PE=2 SV=2
TrEMBL	A0A164SL88	non-specific serine/threonine protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023410 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.605727	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.444452	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	2.478952	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.883809	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	1.151872	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	2.060494	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.071666	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	2.61156	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	9.064115	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	15.894629	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	14.003432	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	9.777051	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	23.149424	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	24.112127	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	16.125593	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	16.634748	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	18.783297	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	16.313757	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	21.454113	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	7.198361	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	33.233173	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.451813	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.290609	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.995381	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	1.60822	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	14.31922	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	8.382241	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	17.299303	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	11.948624	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	5.860739		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.196576		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.434612		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	12.062771		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	11.753264		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	17.592676		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	5.702736		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.624688		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.53638		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.358033	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	1.734513	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.259053	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	1.21645	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	6.190748	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	4.2404	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	4.907401	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	1.195532	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	3.738521	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	17.628647	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	14.626657	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	16.172575	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	3	Ag5G01794, Ag7G01958, Ag8G01826
Arecaceae	Cocos nucifera	1	contig68889702G000010
Asparagaceae	Asparagus officinalis	2	AsparagusV1_07.1091.V1.1, AsparagusV1_07.1152.V1.1
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g15840
Poaceae	Sporobolus alterniflorus	1	Chr22G015600
Salicaceae	Populus euphratica	1	populus_peu12105