Basic Information
Locus ID:
Ag5G01783
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Inactive serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 206760317 | 206784550 | - | Ag5G01783 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 185,780.83 Da | 51.52 | 93.29 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06071 | Beach | 367 | 593 | 1.21557E-75 | IPR000409 |
| CDD | cd00180 | PKc | 221 | 301 | 1.13301E-12 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 1354 | 1389 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1537 | 1571 | 0.0068 | IPR001680 |
| Pfam | PF02138 | Beige/BEACH domain | 363 | 576 | 1.5E-42 | IPR000409 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 732 | 804 | 2.56E-10 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1308 | 1665 | 7.56E-34 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 221 | 359 | 1.63E-16 | IPR011009 |
| SUPERFAMILY | SSF81837 | BEACH domain | 345 | 593 | 6.93E-74 | IPR036372 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 222 | 357 | 1.1E-11 | - |
| Gene3D | G3DSA:1.10.1540.10 | BEACH domain | 358 | 593 | 6.6E-60 | IPR036372 |
| Gene3D | G3DSA:2.130.10.10 | - | 1446 | 1668 | 4.0E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 1296 | 1441 | 1.1E-12 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 722 | 810 | 6.1E-11 | - |
| SMART | SM00320 | WD40_4 | 1633 | 1668 | 25.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 141 | 803 | 0.003 | IPR000719 |
| SMART | SM00320 | WD40_4 | 1533 | 1571 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1306 | 1349 | 7.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1352 | 1389 | 0.016 | IPR001680 |
| SMART | SM01026 | Beach_2 | 361 | 593 | 2.4E-84 | IPR000409 |
| SMART | SM00320 | WD40_4 | 1483 | 1530 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1434 | 1471 | 180.0 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 133 | 499 | 9.503008 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1540 | 1580 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1540 | 1573 | 9.520146 | - |
| ProSiteProfiles | PS50197 | BEACH domain profile. | 349 | 619 | 19.004236 | IPR000409 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 1558 | 1572 | - | IPR019775 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18525.1 | protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases. | 0 |
| RefSeq | XP_017218771.1 | PREDICTED: protein GFS12 isoform X1 [Daucus carota subsp. sativus] | 0 |
| F4JY12 | Protein GFS12 OS=Arabidopsis thaliana OX=3702 GN=GFS12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164SKZ1 | Inactive serine/threonine-protein kinase lvsG OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023392 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.199368 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.015368 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.728426 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.428555 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.694786 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.683385 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.266046 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.943703 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 14.068012 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 15.209161 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 15.052752 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 13.810518 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.994414 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 11.619164 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.856473 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.269409 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 6.224195 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.454932 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.642634 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.540614 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 10.698579 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.206952 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.370108 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.661819 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.63749 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.038456 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 8.466415 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.663727 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.468439 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.32195 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.706543 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.431809 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.621379 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.682825 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 3.185124 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.78603 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.066052 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.991282 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.820001 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.088823 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.44658 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 8.025517 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.56971 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 12.717627 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 13.071206 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.572659 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 15.529437 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 9.261093 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 10.177135 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.81999 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15273 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2739 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019921 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g059860 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg38205, Sbi_jg6336, Sbi_jg6337 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg15518, Seu_jg15519 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003668 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01617, Sgl06781, Sgl14571, Sgl19743, Sgl38309 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014373, gene:ENSEOMG00000031968 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0012530, CQ.Regalona.r1.3BG0012630 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30232300 |
| Apiaceae | Apium graveolens | 1 | Ag5G01783 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G000490 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103721591, gene-LOC113463699 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3218.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA31678 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G18525.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012423m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g25800.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g044210.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1414 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1506 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g00260 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g00690 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG11.1438, evm.TU.LG11.274 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026336 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G01271, Lb1G01275 |
| Poaceae | Echinochloa crus-galli | 2 | AH02.1522, CH02.1741 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_052776, gene-QYE76_052800 |
| Poaceae | Oryza coarctata | 1 | Oco02G009710 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g22390.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G141800, gene-BS78_03G144300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0603612, Pt_Chr0603624 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G022450, Chr05G013370 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G572000 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC7AG048410, gene_TRIDC7BG032450 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G346600.2, TraesCS7B02G236400.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb131030_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6493 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10254 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1600, evm.TU.LG11.955 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g34250 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.1060 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16912 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15943 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17343 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.180 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012235 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8580 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23046 |
| Salicaceae | Populus euphratica | 1 | populus_peu20733 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604475 |
| Solanaceae | Solanum chilense | 1 | SOLCI005873100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006610 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6456 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1373 |
| Zosteraceae | Zostera marina | 1 | Zosma04g26660.v3.1 |