Basic Information
Locus ID:
Ag5G01762
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 205351379 | 205352952 | - | Ag5G01762 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 42,396.67 Da | 41.82 | 84.71 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 13 | 46 | 5.2E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 81 | 3.53E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 12 | 48 | 2.2E-10 | - |
| SMART | SM00256 | fbox_2 | 12 | 51 | 3.9E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 102 | 327 | 2.8E-18 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 6 | 55 | 11.511044 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49610.1 | F-box family protein. | 0 |
| RefSeq | XP_017216057.1 | PREDICTED: F-box protein At5g49610 [Daucus carota subsp. sativus] | 0 |
| Q9FGY4 | F-box protein At5g49610 OS=Arabidopsis thaliana OX=3702 GN=At5g49610 PE=1 SV=1 | 0 | |
| TrEMBL | A0A161ZJV6 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023374 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.967925 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.395774 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 5.429104 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.599497 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.83906 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.569707 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.772501 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 6.172857 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.777678 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.453277 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 15.278168 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 15.108303 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.289042 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 11.314346 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.991521 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.402389 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.98589 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.585817 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.603704 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 7.97763 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.175135 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 17.333754 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.278516 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.159815 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 10.927253 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.019365 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 16.098671 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.559191 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 15.115219 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.555754 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 6.155787 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 3.99004 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 13.349511 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.413957 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 11.590024 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 11.701085 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.900293 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.561598 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.85213 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.244673 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.194173 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.081506 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 8.536314 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 17.658493 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 17.710402 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.475821 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 22.120144 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.531995 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.692444 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.668028 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28129 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2911 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019312 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g054650 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15265, Sbi_jg56075 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26558 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006272 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl01657, Sgl01679, Sgl06832 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002891, gene:ENSEOMG00000029218 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0017000, CQ.Regalona.r1.3AG0000080 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30232740 |
| Apiaceae | Apium graveolens | 1 | Ag5G01762 |
| Arecaceae | Cocos nucifera | 1 | contig69637507G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719309 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3247.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G11851 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G49610.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004464m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g19920.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g005300.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1384 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1475 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g01500 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9327 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1153 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00022555, Pov_00030867, Pov_00037721 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1374, evm.TU.LG07.1500 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.680 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1293 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18461 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6364 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.330 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18830 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13113 |
| Salicaceae | Populus euphratica | 3 | populus_peu09642, populus_peu20774, populus_peu37023 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604484 |
| Solanaceae | Solanum chilense | 1 | SOLCI001641900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005357 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.8020_chr04_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1386 |