Basic Information
Locus ID:
Ag5G01685
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Glycerol-3-phosphate acyltransferase 3-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 186322900 | 186347933 | + | Ag5G01685 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 42,214.75 Da | 43.34 | 97.21 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07991 | LPLAT_LPCAT1-like | 130 | 340 | 1.33844E-92 | - |
| Pfam | PF01553 | Acyltransferase | 142 | 263 | 4.4E-18 | IPR002123 |
| SUPERFAMILY | SSF69593 | Glycerol-3-phosphate (1)-acyltransferase | 129 | 269 | 2.35E-9 | - |
| SMART | SM00563 | plsc_2 | 155 | 266 | 6.6E-23 | IPR002123 |
| Coils | Coil | Coil | 346 | 366 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko00561 (Glycerolipid metabolism)
map00561 (Glycerolipid metabolism)
ko00564 (Glycerophospholipid metabolism)
map00564 (Glycerophospholipid metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60620.1 | glycerol-3-phosphate acyltransferase 9. Glycerol-3-phosphate acyltransferase localized to the ER. Similar to mammalian cells involved in storage oil formation. | 0 |
| RefSeq | XP_017243927.1 | PREDICTED: glycerol-3-phosphate acyltransferase 3 [Daucus carota subsp. sativus] | 0 |
| Q8GWG0 | Glycerol-3-phosphate acyltransferase 9 OS=Arabidopsis thaliana OX=3702 GN=GPAT9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U7W1J6 | glycerol-3-phosphate acyltransferase 3 OS=Nicotiana sylvestris OX=4096 GN=LOC104222866 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.725107 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 8.421487 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 6.846037 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.11987 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 9.663914 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.584754 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.370358 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.282875 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 11.741549 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 13.837708 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.58162 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 15.185781 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 13.864436 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.825152 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 12.203662 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.742847 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 19.327333 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.3339 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 12.34334 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.230087 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 14.484534 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.749746 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 21.323732 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 22.228651 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 20.204649 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 13.341073 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 13.072046 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.083566 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.004324 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.532083 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.790509 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.916297 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 5.311765 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.895405 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.252295 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.078695 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.657554 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.37847 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.414921 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.336423 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.752919 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 16.133295 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 16.149994 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 20.000179 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 16.668653 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 20.151106 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 15.409311 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 22.701557 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 24.748655 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 23.526234 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg26114, jg30390 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21551, gene_22963 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009567 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_3g049580, BVRB_3g056060, BVRB_3g056070, BVRB_9g212830 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2253, Sbi_jg34249 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2501 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00011192, GOSA_00018789 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55571, Sgl60789 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016094, gene:ENSEOMG00000039944 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0002040, CQ.Regalona.r1.9AG0022740 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30075240 |
| Apiaceae | Apium graveolens | 3 | Ag10G00453, Ag1G00679, Ag5G01685 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103704359 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.932.V1.1, AsparagusV1_03.933.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G05325, Ftri5G13275 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G60620.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013846m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g22200.v2.2, Sp7g33030.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g040420.2N, BniB05g003130.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1853 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G2028 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g02510 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0286s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g11290 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.406 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007086 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08110, Lb3G17778 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.3224, BH03.3412, CH03.3618 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0570080, gene-QOZ80_7BG0601900 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0139270.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_040844, gene-QYE76_071658 |
| Poaceae | Oryza coarctata | 2 | Oco13G009100, Oco14G009510 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g24340.1, LOC_Os07g34730.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G299600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0304233 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G005310, Chr24G009110, Chr27G011950, Chr28G008470 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G406300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG029030, gene_TRIDC2BG032700 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G218300.1, TraesCS2B02G243700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb323170_P002, Zm00001eb396350_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-827 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5271, Zma_g6564 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1176, evm.TU.LG02.485, evm.TU.LG09.1729 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g05420 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2373, evm.TU.Scaffold_2_RagTag.36 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-28, nbisL1-mrna-44, nbisL1-mrna-5188 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11723 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3199 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.25 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017102 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14086, nbisL1-mrna-4583 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-22505, nbisL1-mrna-24132 |
| Salicaceae | Populus euphratica | 2 | populus_peu08613, populus_peu36725 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599382 |
| Solanaceae | Solanum chilense | 1 | SOLCI003475300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026667 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_12291, gene_7919 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0228, TC12G0825 |
| Zosteraceae | Zostera marina | 1 | Zosma05g06420.v3.1 |