halophFGD

Basic Information

Locus ID: Ag5G01682

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Pentatricopeptide repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	185587500	185589113	+	Ag5G01682

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.90	52,349.55 Da	43.27	82.22	-0.42

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14432	DYW family of nucleic acid deaminases	354	450	2.1E-33	IPR032867
Pfam	PF01535	PPR repeat	180	209	1.9E-5	IPR002885
Pfam	PF01535	PPR repeat	153	175	0.046	IPR002885
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	89	323	5.5E-31	IPR011990
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	180	213	1.5E-6	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	177	211	11.301158	IPR002885

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G15690.1	Tetratricopeptide repeat (TPR)-like superfamily protein.
RefSeq	XP_017215483.1	PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9ZQE5	Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2
TrEMBL	A0A5B7BAV5	DYW_deaminase domain-containing protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_034302 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	15.112792	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	14.415637	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	11.755272	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	13.970178	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	12.405783	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	13.103487	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	10.285432	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	5.827481	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	15.24614	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	14.800477	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	13.542707	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	12.904548	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	14.144852	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	16.906004	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	11.350809	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	10.980739	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	11.179616	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	22.117607	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	22.624884	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	16.32877	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	20.346413	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	6.482538	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	6.351612	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	7.387449	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	7.97653	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	22.902353	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	21.92433	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	26.195583	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	22.241238	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	23.849829		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	21.074511		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	20.48019		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	40.595535		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	19.999689		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	36.49258		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	29.83387		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	25.036997		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	23.37781		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	25.142582	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	28.135721	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	44.374287	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	10.511072	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	4.926213	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	19.364183	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	16.352116	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	13.355149	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	9.521545	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	9.06782	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	5.089722	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	6.838386	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg11928, jg17978, jg28682
Amaranthaceae	Atriplex hortensis	2	Ah016922, Ah035473
Amaranthaceae	Beta vulgaris	2	BVRB_2g026760, BVRB_7g158630
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg16535, Sbi_jg21898, Sbi_jg29540, Sbi_jg61058
Amaranthaceae	Salicornia europaea	2	Seu_jg15850, Seu_jg22817
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00008484, GOSA_00020591
Amaranthaceae	Suaeda glauca	6	Sgl14623, Sgl14658, Sgl19826, Sgl63150, Sgl63285, Sgl67764
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000010815, gene:ENSEOMG00000018661 ... gene:ENSEOMG00000021178, gene:ENSEOMG00000029189, gene:ENSEOMG00000032806, gene:ENSEOMG00000045641, gene:ENSEOMG00000050465
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.2BG0021120, CQ.Regalona.r1.8AG0007470 ... CQ.Regalona.r1.8BG0007710
Anacardiaceae	Pistacia vera	2	pistato.v30252580, pistato.v30266050
Apiaceae	Apium graveolens	3	Ag10G02934, Ag5G01682, Ag6G02444
Arecaceae	Cocos nucifera	2	COCNU_05G006810, COCNU_06G004840
Arecaceae	Phoenix dactylifera	3	gene-LOC103703367, gene-LOC103721816, gene-LOC120111010
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.833.V1.1, AsparagusV1_03.113.V1.1 ... AsparagusV1_04.3101.V1.1, AsparagusV1_05.2923.V1.1
Asteraceae	Flaveria trinervia	3	Ftri14G11792, Ftri3G25911, Ftri8G13403
Brassicaceae	Arabidopsis thaliana	5	AT1G29710.1, AT2G15690.1, AT2G25580.1, AT2G34370.1 ... AT4G32450.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10000083m.g.v1.0, Thhalv10002347m.g.v1.0 ... Thhalv10010282m.g.v1.0, Thhalv10017960m.g.v1.0, Thhalv10022696m.g.v1.0, Thhalv10024867m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp3g28930.v2.2, Sp4g04980.v2.2, Sp5g08390.v2.2 ... Sp7g30240.v2.2
Brassicaceae	Brassica nigra	6	BniB02g012270.2N, BniB02g024000.2N, BniB03g044320.2N ... BniB05g005620.2N, BniB05g018660.2N, BniB06g065730.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G2310, Ceq07G2155
Casuarinaceae	Casuarina glauca	2	Cgl04G2512, Cgl07G2385
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno06g12390, gene.Cymno09g07370
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g12800, gene.Thate03g05310
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG03.2581, evm.TU.LG06.518, evm.TU.LG06.969 ... evm.TU.LG07.1212
Plantaginaceae	Plantago ovata	3	Pov_00013971, Pov_00032916, Pov_00035357
Plumbaginaceae	Limonium bicolor	1	Lb1G05018
Poaceae	Echinochloa crus-galli	7	AH02.3105, AH07.3300, BH02.3178, BH05.1186, CH01.2673 ... CH05.1524, CH07.3188
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_5AG0361190, gene-QOZ80_5BG0409610 ... gene-QOZ80_5BG0415660
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0094040.1.CDS1 ... HORVU.MOREX.r3.3HG0287400.1
Poaceae	Lolium multiflorum	2	gene-QYE76_015107, gene-QYE76_055368
Poaceae	Oryza coarctata	4	Oco01G019670, Oco02G020140, Oco07G000150, Oco08G001340
Poaceae	Oryza sativa	3	LOC_Os01g53610.1, LOC_Os02g05800.1, LOC_Os04g09530.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G269300, gene-BS78_09G256800, gene-BS78_K136900
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0604933, Pt_Chr0605236
Poaceae	Sporobolus alterniflorus	8	Chr02G010230, Chr04G005840, Chr05G006070, Chr05G023160 ... Chr08G015780, Chr0G005990, Chr18G015990, Chr22G000050
Poaceae	Thinopyrum elongatum	2	Tel1E01G731600, Tel3E01G459400
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG063620, gene_TRIDC1BG072850 ... gene_TRIDC3AG041330, gene_TRIDC3BG046620
Poaceae	Triticum aestivum	6	TraesCS1A02G433400.1.cds1, TraesCS1B02G469300.1.cds1 ... TraesCS1D02G443000.1.cds1, TraesCS3A02G278400.1, TraesCS3B02G312600.1, TraesCS3D02G278700.1
Poaceae	Zea mays	3	Zm00001eb153890_P001, Zm00001eb297450_P001 ... Zm00001eb345230_P002
Poaceae	Zoysia japonica	1	nbis-gene-24710
Poaceae	Zoysia macrostachya	2	Zma_g28915, Zma_g8604
Portulacaceae	Portulaca oleracea	2	evm.TU.LG13.231, evm.TU.LG14.1833
Posidoniaceae	Posidonia oceanica	3	gene.Posoc04g06060, gene.Posoc08g00950, gene.Posoc10g06760
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.105, evm.TU.Scaffold_1_RagTag.2103 ... evm.TU.Scaffold_2_RagTag.309, evm.TU.Scaffold_4_RagTag.1852
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-4881, nbisL1-mrna-7192
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-16958, nbisL1-mrna-5090
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-14473, nbisL1-mrna-3432, nbisL1-mrna-4636 ... nbisL1-mrna-9829
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000005l.133, add.evm.TU.utg000008l.400 ... add.evm.TU.utg000009l.280, add.evm.TU.utg000016l.80
Rhizophoraceae	Kandelia obovata	2	Maker00000315, Maker00005524
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-14832, nbisL1-mrna-16882, nbisL1-mrna-17708
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-22036, nbisL1-mrna-6077
Salicaceae	Populus euphratica	2	populus_peu27387, populus_peu33708
Solanaceae	Lycium barbarum	4	gene-LOC132599047, gene-LOC132600830, gene-LOC132620301 ... gene-LOC132642075
Solanaceae	Solanum chilense	3	SOLCI002114100, SOLCI004114400, SOLCI005040000
Solanaceae	Solanum pennellii	3	gene-LOC107005583, gene-LOC107018492, gene-LOC107026572
Tamaricaceae	Reaumuria soongarica	3	STRG.2821_chr02_-, STRG.9762_chr06_-, gene_14860
Tamaricaceae	Tamarix chinensis	3	TC01G4056, TC12G1188, TC12G1968
Zosteraceae	Zostera marina	2	Zosma01g32350.v3.1, Zosma03g03220.v3.1