Basic Information
Locus ID:
Ag5G01674
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
FVE
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 184218681 | 184232880 | + | Ag5G01674 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 54,087.00 Da | 48.25 | 74.46 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 354 | 393 | 2.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 208 | 243 | 0.0055 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 61 | 126 | 1.8E-16 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 317 | 349 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 268 | 304 | 0.015 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 157 | 461 | 6.41E-45 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 49 | 476 | 1.1E-110 | IPR015943 |
| SMART | SM00320 | WD40_4 | 203 | 243 | 0.0044 | IPR001680 |
| SMART | SM00320 | WD40_4 | 411 | 458 | 47.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 264 | 304 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 309 | 349 | 1.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 353 | 393 | 4.2E-7 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 360 | 395 | 9.335602 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 360 | 395 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 271 | 313 | 10.174269 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 220 | 244 | 8.536777 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 45 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19520.1 | Transducin family protein / WD-40 repeat family protein. Controls flowering. | 0 |
| RefSeq | XP_017223645.1 | PREDICTED: WD-40 repeat-containing protein MSI4-like [Daucus carota subsp. sativus] | 0 |
| O22607 | WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana OX=3702 GN=MSI4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A175YK83 | CAF1C_H4-bd domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028589 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 19.910524 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 21.02033 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 24.671581 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 22.40719 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 22.095688 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 42.643112 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 29.919333 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 40.640232 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 57.38398 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 59.719212 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 63.471851 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 54.180847 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 53.332329 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 47.981098 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 18.677172 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 20.116669 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 19.330599 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 26.344662 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 23.701248 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 23.867941 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 29.219236 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 22.58667 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 25.310232 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 27.777048 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 30.976933 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 26.903872 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 25.791367 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 28.294531 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 27.018549 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 18.154396 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 21.235201 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 14.926745 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 30.048807 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 29.79038 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 24.815308 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 19.594038 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 20.312576 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 20.3755 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 20.935614 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 13.601211 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 13.482036 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 16.999481 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 26.504442 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 56.598961 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 48.722137 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 23.207247 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 40.008495 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 53.113567 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 65.765785 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 57.870274 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg13580, jg27258, jg31690, jg32926 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11035, gene_5646 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah015315, Ah028883 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g176780 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg25365, Sbi_jg33537, Sbi_jg9219 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19368, Seu_jg8233 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002918, GOSA_00011143 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73248, Sgl76767 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000009150, gene:ENSEOMG00000033744 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0000310, CQ.Regalona.r1.8AG0014470 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30116720, pistato.v30258240 |
| Apiaceae | Apium graveolens | 4 | Ag5G01674, Ag8G00241, Ag9G01089, AgUnG00772 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G001380 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103709571, gene-LOC103711179, gene-LOC103720121 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.2358.V1.1, AsparagusV1_03.2940.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri14G19218, Ftri18G21942, Ftri1G12254, FtriNA08905 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G19520.1, AT4G29730.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022653m.g.v1.0, Thhalv10025026m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g32900.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g015640.2N, BniB03g068830.2N, BniB04g024920.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0874, Ceq06G0853 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0885, Cgl06G0878 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g11580, gene.Cymno06g03770 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0591s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g24090 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.44, evm.TU.LG07.1238 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002934, Pov_00025814 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb3G16981, Lb3G16984, Lb3G18747, Lb5G29398 |
| Poaceae | Echinochloa crus-galli | 2 | BH02.3017, CH02.3511 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0030700, gene-QOZ80_1BG0080660 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0284120.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_054860 |
| Poaceae | Oryza coarctata | 2 | Oco01G018560, Oco02G018840 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g51300.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G252300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0602899, Pt_Chr0602945 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G011510, Chr03G014710, Chr08G014780, Chr0G026270 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G422600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG037590, gene_TRIDC3BG041980 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G250900.2, TraesCS3B02G280400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb155150_P002, Zm00001eb361300_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-26268 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10992 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.2259, evm.TU.LG07.1132, evm.TU.LG19.335 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g21310 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.515, evm.TU.Scaffold_4_RagTag.1836 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13005, nbisL1-mrna-25744 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2561, nbisL1-mrna-6299 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16905, nbisL1-mrna-4623 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.1042, evm.TU.utg000033l.357 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000330, Maker00014843 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14842, nbisL1-mrna-4024 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1133, nbisL1-mrna-8191 |
| Salicaceae | Populus euphratica | 4 | populus_peu05068, populus_peu09186, populus_peu33535 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132616917, gene-LOC132618307, gene-LOC132633465 |
| Solanaceae | Solanum chilense | 2 | SOLCI001848200, SOLCI007226100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014851, gene-LOC107026383 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.2420_chr01_-, gene_2506 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G0340, TC10G1754 |
| Zosteraceae | Zostera marina | 1 | Zosma05g25500.v3.1 |