Basic Information
Locus ID:
Ag5G01665
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
CAK1AT
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 181491822 | 181494738 | + | Ag5G01665 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 56,408.95 Da | 50.83 | 81.83 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 56 | 204 | 5.2E-32 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 305 | 437 | 4.2E-21 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 48 | 443 | 1.45E-75 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 47 | 219 | 3.0E-38 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 302 | 448 | 1.6E-35 | - |
| SMART | SM00220 | serkin_6 | 56 | 437 | 7.5E-77 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 56 | 437 | 37.983017 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 174 | 186 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 62 | 85 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28980.1 | CDK-activating kinase 1AT. Encodes a CDK-activating kinase that regulates root initial cell differentiation. Phosphorylates CDKD2 and CDKD3, but not CDKD1. Controls CDK activities and basal transcription. | 0 |
| RefSeq | XP_017235379.1 | PREDICTED: cyclin-dependent kinase F-1 [Daucus carota subsp. sativus] | 0 |
| O80345 | Cyclin-dependent kinase F-1 OS=Arabidopsis thaliana OX=3702 GN=CDKF-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A166DT87 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_006483 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 38.835758 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 33.800282 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 35.039894 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 36.153728 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 34.917381 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 29.795279 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 35.299046 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 31.053589 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.702723 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 20.650421 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 22.591692 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 22.690937 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 25.449415 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 19.119022 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 32.605026 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 34.410355 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 35.812084 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 32.518135 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 28.697815 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 33.777569 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 33.277725 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 38.531502 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 39.977612 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 28.367004 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 34.656345 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 27.174078 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 30.881401 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 26.829145 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 33.448307 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 20.191599 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 22.170689 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 20.670244 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 33.177643 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 26.089264 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 37.785561 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 41.640743 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 25.129601 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 38.162697 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.272194 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 15.282146 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.433766 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 33.50214 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 26.599396 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 64.45903 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 43.868759 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 38.750202 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 35.897907 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 24.426149 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 24.681534 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 23.23933 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3830 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9097 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014578 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g196820 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25006, Sbi_jg8858 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19744 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007777 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42246, Sgl47022 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010907, gene:ENSEOMG00000033246 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0019960, CQ.Regalona.r1.8BG0022530 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30256740 |
| Apiaceae | Apium graveolens | 1 | Ag5G01665 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G003930, COCNU_03G011920 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702556, gene-LOC103715593 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1757.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G21507 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G28980.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025049m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g26920.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g008580.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1512 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1567 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g12040, gene.Cymno06g03240 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g25230 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1107 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003860 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34084 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1657, BH06.1611, CH06.1765 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0530820, gene-QOZ80_6BG0484670 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0710600.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_033982 |
| Poaceae | Oryza coarctata | 2 | Oco11G009780, Oco12G009750 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g22820.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G144500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0400092 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G012870, Chr11G009350, Chr14G011520, Chr21G011780 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G579100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG047890, gene_TRIDC7BG039560 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G342900.1, TraesCS7B02G240100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb278130_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35448 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32317 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2853, evm.TU.LG23.1053 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g22540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.433 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13103 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6589 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16826 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.290 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015196 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4089 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8277 |
| Salicaceae | Populus euphratica | 1 | populus_peu21944 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636800 |
| Solanaceae | Solanum chilense | 1 | SOLCI002063600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005203 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9321 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1302 |
| Zosteraceae | Zostera marina | 1 | Zosma05g25230.v3.1 |