Basic Information
Locus ID:
Ag5G01639
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 176557908 | 176561540 | - | Ag5G01639 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 34,714.98 Da | 49.53 | 83.31 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| PRINTS | PR02054 | Plant protein family FAM175 signature | 269 | 295 | 3.1E-28 | IPR023241 |
| PRINTS | PR02054 | Plant protein family FAM175 signature | 1 | 18 | 3.1E-28 | IPR023241 |
| PRINTS | PR02054 | Plant protein family FAM175 signature | 154 | 174 | 3.1E-28 | IPR023241 |
| PRINTS | PR02054 | Plant protein family FAM175 signature | 43 | 67 | 3.1E-28 | IPR023241 |
| PRINTS | PR02054 | Plant protein family FAM175 signature | 190 | 210 | 3.1E-28 | IPR023241 |
| PRINTS | PR02054 | Plant protein family FAM175 signature | 246 | 266 | 3.1E-28 | IPR023241 |
| PRINTS | PR02051 | Protein family FAM175 signature | 73 | 92 | 7.6E-15 | IPR023238 |
| PRINTS | PR02051 | Protein family FAM175 signature | 98 | 114 | 7.6E-15 | IPR023238 |
| PRINTS | PR02051 | Protein family FAM175 signature | 31 | 48 | 7.6E-15 | IPR023238 |
| PRINTS | PR02051 | Protein family FAM175 signature | 11 | 29 | 7.6E-15 | IPR023238 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08780.1 | 0 | |
| RefSeq | XP_017215477.1 | PREDICTED: uncharacterized protein LOC108193370 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164SZE5 | BRCA1-A complex subunit Abraxas OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_023998 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 64.44104 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 53.741592 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 41.624702 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 38.829018 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 40.418041 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 34.993324 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 35.102913 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 28.333075 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 51.029388 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 62.238697 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 51.537754 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 51.49297 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 47.471352 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 42.765862 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 24.8482 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 26.699982 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 28.686399 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 25.945883 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 21.408619 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 30.948977 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 33.399326 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 34.914459 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 42.359734 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 35.564014 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 35.682751 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 27.155769 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 27.302008 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 24.908566 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 30.362404 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 18.106241 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 14.517544 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 19.95713 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 65.0821 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 36.548603 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 80.07325 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 49.724777 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 34.393288 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 45.749153 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 22.802273 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 16.458431 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 9.994418 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 29.096712 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 31.045673 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 34.794609 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 36.034103 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 27.376245 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 35.071217 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 34.87579 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 37.912567 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 39.077118 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3224 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2290 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003224 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g103380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24303, Sbi_jg8133 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11889 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010970 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52487, Sgl57779 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004244, gene:ENSEOMG00000023922 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0010730, CQ.Regalona.r1.5BG0011250 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30267860 |
| Apiaceae | Apium graveolens | 1 | Ag5G01639 |
| Arecaceae | Cocos nucifera | 1 | contig69363059G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708924 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3387.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G08780.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021171m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07200.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g055770.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0957 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0975 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g01650 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1267s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g02180 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5508 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.950 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006944 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09140 |
| Poaceae | Echinochloa crus-galli | 6 | AH04.43, AH05.67, BH04.52, CH04.170, CH05.19, CH07.1608 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0313470, gene-QOZ80_5AG0378790 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0175640.1, HORVU.MOREX.r3.5HG0465240.1 |
| Poaceae | Oryza coarctata | 3 | Oco07G008650, Oco08G008590, Oco14G009750 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g40320.1, LOC_Os07g35600.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G007600, gene-BS78_07G038600 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0302349, Pt_Chr0702856, Pt_Chr0705237 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr03G008210, Chr0G006540, Chr16G008140, Chr19G011470 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G587700, Tel5E01G261300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG049230, gene_TRIDC2BG051720 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1A02G382300.1, TraesCS1B02G407600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb163300_P001, Zm00001eb421620_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25831, nbis-gene-26958 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18330, Zma_g24606 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2805, evm.TU.LG16.856 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g09210 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1869, evm.TU.Scaffold_2_RagTag.583 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5633 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10320, nbisL1-mrna-1349 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3660, nbisL1-mrna-9611 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.991, evm.TU.utg000016l.730 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005233, Maker00017133 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2660, nbisL1-mrna-4921 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13804, nbisL1-mrna-16661 |
| Salicaceae | Populus euphratica | 1 | populus_peu25374 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630928 |
| Solanaceae | Solanum chilense | 1 | SOLCI003291200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029242 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24955_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2756 |
| Zosteraceae | Zostera marina | 1 | Zosma01g17730.v3.1 |