Basic Information
Locus ID:
Ag5G01619
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
BAG family molecular chaperone regulator
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 168495364 | 168499036 | - | Ag5G01619 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 29,312.14 Da | 27.66 | 87.23 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02179 | BAG domain | 142 | 215 | 1.5E-8 | IPR003103 |
| Pfam | PF00240 | Ubiquitin family | 38 | 105 | 8.7E-10 | IPR000626 |
| SUPERFAMILY | SSF63491 | BAG domain | 115 | 219 | 1.44E-13 | IPR036533 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 26 | 110 | 9.9E-16 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 36 | 107 | 2.3E-19 | - |
| Gene3D | G3DSA:1.20.58.120 | BAG domain | 117 | 221 | 2.7E-26 | IPR036533 |
| ProSiteProfiles | PS51035 | BAG domain profile. | 177 | 217 | 9.766806 | IPR003103 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 38 | 112 | 12.944685 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 267 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51780.1 | BCL-2-associated athanogene 4. A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. BD domain of ATBAG4 had highest similarity to human DB domain of BAG protein. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. | 0 |
| RefSeq | XP_017215783.1 | PREDICTED: BAG family molecular chaperone regulator 4-like [Daucus carota subsp. sativus] | 0 |
| Q8RX71 | BAG family molecular chaperone regulator 4 OS=Arabidopsis thaliana OX=3702 GN=BAG4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164SZS9 | BAG family molecular chaperone regulator 4-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024008 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 34.880203 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 30.253767 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 55.472351 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 49.503483 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 48.960499 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 69.098045 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 53.78022 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 66.722298 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 35.931141 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 31.710342 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 34.215458 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 26.773834 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 31.756996 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 33.185341 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 46.406082 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 32.579945 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 48.373825 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 35.879257 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 38.564564 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 37.805332 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 43.811787 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 41.898403 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 35.762718 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 37.100613 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 44.962933 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 37.059425 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 38.098297 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 41.655128 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 38.167957 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 24.507343 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 29.745577 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 24.493153 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 20.145069 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 25.489229 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 24.007589 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 29.937531 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 31.202429 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 34.069611 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 30.497313 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 27.199059 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 29.114302 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 70.898048 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 69.324966 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 179.213348 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 136.023514 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 77.128738 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 91.111366 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 46.643608 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 40.918343 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 47.097591 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3242 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15220 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003288 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g103090 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4802, Sbi_jg7279 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12727 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001447 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl04459, Sgl09508, Sgl51668, Sgl53200, Sgl56976, Sgl58464 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004828, gene:ENSEOMG00000021253 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0010500, CQ.Regalona.r1.5BG0010980 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30061130, pistato.v30064900, pistato.v30267480 |
| Apiaceae | Apium graveolens | 2 | Ag5G01619, Ag8G00067 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G003460, COCNU_12G006700 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722772 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.286.V1.1, AsparagusV1_08.3404.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G28631, Ftri10G32921 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G51780.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010632m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g10490.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g037980.2N, BniB02g074480.2N, BniB08g065890.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G0986, Ceq08G1843 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1004, Cgl08G1900 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g18020 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g16740, gene.Thate06g02730 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-5514, nbisL1-mrna-5841, nbisL1-mrna-615 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.974, evm.TU.LG09.1060 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002693 |
| Plumbaginaceae | Limonium bicolor | 7 | Lb0G37405, Lb2G09239, Lb2G09240, Lb2G09257, Lb2G09258 ... |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3762, BH02.3773, BH07.4087 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0038740, gene-QOZ80_1BG0088760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0303840.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_055615, gene-QYE76_055814 |
| Poaceae | Oryza coarctata | 2 | Oco01G024030, Oco02G024800 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g61500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G325100 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0601916, Pt_Chr0601917, Pt_Chr0602006 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G005620, Chr03G019360, Chr05G027770, Chr08G022700 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G562400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG050500, gene_TRIDC3BG056840 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G350700.1, TraesCS3B02G383300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb148980_P001, Zm00001eb368400_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-11512 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8932 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2823, evm.TU.LG16.833, evm.TU.LG18.525 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g37370, gene.Posoc07g13880 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.106, evm.TU.Scaffold_1_RagTag.1844 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24692, nbisL1-mrna-4601 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-1366, nbisL1-mrna-15488 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-19411, nbisL1-mrna-3677 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000016l.713, evm.TU.utg000027l.504 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00016786, Maker00018080 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4938, nbisL1-mrna-5490 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11639, nbisL1-mrna-13782 |
| Salicaceae | Populus euphratica | 3 | populus_peu01736, populus_peu25409, populus_peu36074 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605792, gene-LOC132606991 |
| Solanaceae | Solanum chilense | 1 | SOLCI001037200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107021738, gene-LOC107032005 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.24935_chr08_+, gene_12261 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2783, TC06G0267 |
| Zosteraceae | Zostera marina | 2 | Zosma01g32440.v3.1, Zosma02g21760.v3.1 |