Basic Information
Locus ID:
Ag5G01595
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Phosphoinositide 3-kinase regulatory subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 158156903 | 158158066 | + | Ag5G01595 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 42,038.43 Da | 41.62 | 75.32 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 258 | 294 | 6.5E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 256 | 347 | 2.11E-13 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 251 | 370 | 6.0E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 305 | 342 | 24.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 255 | 294 | 3.2E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 262 | 294 | 11.73468 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 262 | 294 | 14.184453 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29380.2 | - | 0 |
| RefSeq | XP_017222808.1 | PREDICTED: phosphoinositide 3-kinase regulatory subunit 4 [Daucus carota subsp. sativus] | 0 |
| Q9M0E5 | Serine/threonine-protein kinase VPS15 OS=Arabidopsis thaliana OX=3702 GN=VPS15 PE=1 SV=1 | 0 | |
| TrEMBL | A0A175YK28 | non-specific serine/threonine protein kinase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_028653 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 2.591902 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 2.840334 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.598891 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.842755 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.982435 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.175858 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.305557 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.699706 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 8.372433 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 6.4808 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 8.323718 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.904675 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.474304 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.092262 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.876811 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.796801 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.082705 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 8.141951 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.463164 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.558235 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.389419 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 4.65629 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.634241 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.792003 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.555559 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 7.347177 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.784418 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.467739 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.37044 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.09953 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 5.157398 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.474681 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.078633 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.162686 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.883951 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.434953 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.680373 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.532222 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.991905 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.292034 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 5.18754 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.154967 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.696587 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 18.015821 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.303891 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.893716 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 15.340889 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.874447 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 3.421527 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 2.483759 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg31661 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9125 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014666 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g197640 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25085, Sbi_jg8931 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19665 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007712, GOSA_00014470 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl42324, Sgl42361, Sgl47098 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010407, gene:ENSEOMG00000032907 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0016740, CQ.Regalona.r1.8AG0019210 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30257460 |
| Apiaceae | Apium graveolens | 5 | Ag5G01593, Ag5G01594, Ag5G01595, Ag5G01596, Ag8G00324 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G005400 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103724252 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.775.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G10793 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G29380.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024212m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g27250.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g008240.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1569 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1628 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g19760 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0353s00010.v1.0, Dusal.0353s00013.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g02000 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1291, evm.TU.LG07.1165 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039668 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb5G26415, Lb5G26416, Lb5G26417 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3788, BH07.3608, CH07.3684 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0149040, gene-QOZ80_2BG0205210 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0624570.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G024280, Oco04G024740 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g55340.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G188700, gene-BS78_04G166200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0206297 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G017650, Chr13G001830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G640500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG053930, gene_TRIDC6BG062800 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G360100.2, TraesCS6B02G393000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb192340_P002, Zm00001eb257890_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8425 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14626 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.2791, evm.TU.LG03.2042, evm.TU.LG14.343 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g02510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1891 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25694 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15219 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4667 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1078 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001255 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14804 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1178 |
| Salicaceae | Populus euphratica | 1 | populus_peu09190 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613469 |
| Solanaceae | Solanum chilense | 1 | SOLCI005936100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017746 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8037 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G1503, TC12G1319 |
| Zosteraceae | Zostera marina | 2 | Zosma01g16780.v3.1, Zosma04g25780.v3.1 |