halophFGD

Basic Information

Locus ID: Ag5G01580

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Protein phosphatase 2C and cyclic nucleotide-binding kinase domain-containing

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	155251624	155261392	-	Ag5G01580

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.97	120,910.00 Da	40.32	88.62	-0.22

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00038	CAP_ED	486	595	1.19404E-20	IPR000595
CDD	cd00038	CAP_ED	612	738	1.1855E-11	IPR000595
CDD	cd00143	PP2Cc	118	392	1.78796E-55	IPR001932
Pfam	PF00481	Protein phosphatase 2C	128	370	1.1E-34	IPR001932
Pfam	PF00069	Protein kinase domain	796	1032	2.2E-34	IPR000719
Pfam	PF00027	Cyclic nucleotide-binding domain	631	736	1.9E-7	IPR000595
Pfam	PF00027	Cyclic nucleotide-binding domain	504	596	6.8E-17	IPR000595
SUPERFAMILY	SSF51206	cAMP-binding domain-like	604	738	8.77E-17	IPR018490
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	794	1064	2.6E-44	IPR011009
SUPERFAMILY	SSF81606	PP2C-like	88	393	6.41E-52	IPR036457
SUPERFAMILY	SSF51206	cAMP-binding domain-like	466	596	1.14E-25	IPR018490
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	863	1049	1.3E-60	-
Gene3D	G3DSA:2.60.120.10	Jelly Rolls	601	748	1.6E-20	IPR014710
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	790	862	1.3E-60	-
Gene3D	G3DSA:3.60.40.10	-	97	393	1.4E-64	IPR036457
Gene3D	G3DSA:2.60.120.10	Jelly Rolls	461	600	6.1E-31	IPR014710
SMART	SM00100	cnmp_10	612	754	4.1E-4	IPR000595
SMART	SM00100	cnmp_10	486	610	1.4E-9	IPR000595
SMART	SM00332	PP2C_4	104	390	2.9E-55	IPR001932
SMART	SM00220	serkin_6	786	1032	7.6E-21	IPR000719
ProSiteProfiles	PS50042	cAMP/cGMP binding motif profile.	486	595	26.180799	IPR000595
ProSiteProfiles	PS50011	Protein kinase domain profile.	751	1032	26.760622	IPR000719
ProSiteProfiles	PS51746	PPM-type phosphatase domain profile.	102	392	40.245106	IPR001932
ProSiteProfiles	PS50042	cAMP/cGMP binding motif profile.	612	753	16.3256	IPR000595
ProSitePatterns	PS01032	PPM-type phosphatase domain signature.	138	146	-	IPR000222
PRINTS	PR00103	cAMP-dependent protein kinase signature	522	536	1.6E-6	-
PRINTS	PR00103	cAMP-dependent protein kinase signature	507	521	1.6E-6	-
PRINTS	PR00103	cAMP-dependent protein kinase signature	557	566	1.6E-6	-
PRINTS	PR00103	cAMP-dependent protein kinase signature	732	744	1.6E-6	-
Coils	Coil	Coil	807	827	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding) GO:0016791 (phosphatase activity) GO:0043169 (cation binding)

KEGG Pathway

KO Term:

K19477 (cGMP-dependent protein kinase 2 [EC:2.7.11.12])

Pathway:

ko04022 (cGMP-PKG signaling pathway) map04022 (cGMP-PKG signaling pathway) map04611 (Platelet activation)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G20050.1	protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases.
RefSeq	XP_017218679.1	PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein [Daucus carota subsp. sativus]
Swiss-Prot	Q9SL76	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=At2g20050/At2g20040 PE=2 SV=2
TrEMBL	A0A164TIG5	protein-serine/threonine phosphatase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024695 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	13.859184	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	14.066206	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	13.137735	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	13.384415	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	13.546615	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	13.162648	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	9.167906	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	7.536758	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	36.197601	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	35.047626	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	40.993416	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	31.402767	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	31.54805	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	26.552174	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	21.551014	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	22.08757	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	23.596973	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	44.583767	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	27.82575	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	41.286861	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	48.770931	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	28.952238	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	32.153187	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	21.706041	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	27.610836	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	45.74287	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	36.645161	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	37.242195	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	45.01532	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	11.038317		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	18.528133		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	13.972034		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	25.289999		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	11.564798		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	26.555468		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	14.530177		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	10.940354		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	10.766819		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	32.642944	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	30.905851	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	23.735109	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	25.251518	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	24.467098	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	28.166012	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	27.359325	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	26.376097	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	31.391584	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	14.758264	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	12.790245	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	12.93294	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg11200, jg12489, jg27949, jg31641
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10739, gene_4189
Amaranthaceae	Atriplex hortensis	3	Ah014594, Ah020583, Ah020588
Amaranthaceae	Beta vulgaris	1	BVRB_8g197060
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg25033, Sbi_jg38175, Sbi_jg6297, Sbi_jg8881
Amaranthaceae	Salicornia europaea	2	Seu_jg15554, Seu_jg19721
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00007757
Amaranthaceae	Suaeda glauca	2	Sgl42270, Sgl47046
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000011728, gene:ENSEOMG00000013583 ... gene:ENSEOMG00000029309, gene:ENSEOMG00000034013, gene:ENSEOMG00000044348, gene:ENSEOMG00000044982
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.3AG0015740, CQ.Regalona.r1.3BG0016790 ... CQ.Regalona.r1.8BG0022670
Anacardiaceae	Pistacia vera	2	pistato.v30238060, pistato.v30256950
Apiaceae	Apium graveolens	3	Ag1G01922, Ag5G01580, Ag9G01808
Arecaceae	Cocos nucifera	5	COCNU_01G017210, COCNU_03G011750, scaffold006566G000010 ... scaffold006566G000040, scaffold006566G000060
Arecaceae	Phoenix dactylifera	4	gene-LOC103696015, gene-LOC103702537, gene-LOC103710933 ... gene-LOC120103717
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1954.V1.1, AsparagusV1_05.1050.V1.1 ... AsparagusV1_07.914.V1.1
Asteraceae	Flaveria trinervia	3	Ftri15G12986, Ftri15G27950, Ftri16G23273
Brassicaceae	Arabidopsis thaliana	2	AT2G20050.1, AT3G06270.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10001889m.g.v1.0, Thhalv10021055m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g05190.v2.2, Sp3g33360.v2.2
Brassicaceae	Brassica nigra	4	BniB02g072800.2N, BniB03g024680.2N, BniB03g069610.2N ... BniB07g059750.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq06G1534, Ceq09G1262, Ceq09G1263
Casuarinaceae	Casuarina glauca	3	Cgl06G1588, Cgl09G1350, Cgl09G1351
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno05g05290, gene.Cymno16g02870
Dunaliellaceae	Dunaliella salina	4	Dusal.0198s00006.v1.0, Dusal.0198s00007.v1.0 ... Dusal.0261s00015.v1.0, Dusal.0311s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g16300, gene.Thate06g15990, gene.Thate06g22690
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-7053
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG07.1125, evm.TU.LG11.1409
Plantaginaceae	Plantago ovata	2	Pov_00003901, Pov_00026243
Plumbaginaceae	Limonium bicolor	3	Lb0G38087, Lb1G00112, Lb7G34075
Poaceae	Echinochloa crus-galli	6	AH03.3899, AH07.1238, BH03.4187, BH07.1331, CH07.1040 ... CH07.308
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0109450, gene-QOZ80_2BG0163000 ... gene-QOZ80_7AG0579680, gene-QOZ80_7BG0610830
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0119030.1, HORVU.MOREX.r3.6HG0580660.1
Poaceae	Lolium multiflorum	2	gene-QYE76_029561, gene-QYE76_039209
Poaceae	Oryza coarctata	4	Oco03G007740, Oco04G008100, Oco13G014290, Oco14G015130
Poaceae	Oryza sativa	2	LOC_Os02g17970.1, LOC_Os07g45170.1
Poaceae	Paspalum vaginatum	2	gene-BS78_02G374800, gene-BS78_04G121100
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0201921, Pt_Chr0506174
Poaceae	Sporobolus alterniflorus	3	Chr09G000460, Chr19G001180, Chr27G016230
Poaceae	Thinopyrum elongatum	3	Tel2E01G286000, Tel3E01G467900, Tel6E01G378600
Poaceae	Triticum dicoccoides	5	gene_TRIDC2AG017600, gene_TRIDC2BG021250 ... gene_TRIDC5AG072250, gene_TRIDC6AG027740, gene_TRIDC6BG035380
Poaceae	Triticum aestivum	6	TraesCS2A02G141100.2, TraesCS2B02G166100.3 ... TraesCS2D02G144500.3, TraesCS6A02G191000.1, TraesCS6B02G231400.1, TraesCS6D02G174700.1
Poaceae	Zea mays	3	Zm00001eb110450_P001, Zm00001eb203570_P004 ... Zm00001eb329360_P001
Poaceae	Zoysia japonica	1	nbis-gene-34103
Poaceae	Zoysia macrostachya	2	Zma_g15333, Zma_g6975
Portulacaceae	Portulaca oleracea	5	evm.TU.LG02.2866, evm.TU.LG03.1911, evm.TU.LG14.212 ... evm.TU.LG18.982, evm.TU.LG23.1067
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g11120, gene.Posoc01g11140, gene.Posoc05g07970 ... gene.Posoc09g07280
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_3_RagTag.509, evm.TU.Scaffold_4_RagTag.1922 ... evm.TU.Scaffold_6_RagTag.668
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-1453, nbisL1-mrna-16014, nbisL1-mrna-25654 ... nbisL1-mrna-25658
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-10370, nbisL1-mrna-14767, nbisL1-mrna-4118
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-4691, nbisL1-mrna-560, nbisL1-mrna-6232
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.1093, evm.TU.utg000011l.404 ... evm.TU.utg000019l.911
Rhizophoraceae	Kandelia obovata	3	Maker00000656, Maker00008137, Maker00012698
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14789, nbisL1-mrna-15370
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-1205, nbisL1-mrna-2063, nbisL1-mrna-3408
Salicaceae	Populus euphratica	4	populus_peu07830, populus_peu21959, populus_peu22023 ... populus_peu37646
Solanaceae	Lycium barbarum	2	gene-LOC132641084, gene-LOC132645030
Solanaceae	Solanum chilense	2	SOLCI003483600, SOLCI005629700
Solanaceae	Solanum pennellii	2	gene-LOC107008357, gene-LOC107020369
Tamaricaceae	Reaumuria soongarica	2	gene_13276, gene_8916
Tamaricaceae	Tamarix chinensis	2	TC02G0102, TC10G1458
Zosteraceae	Zostera marina	2	Zosma01g20530.v3.1, Zosma05g13440.v3.1