Basic Information
Locus ID:
Ag5G01574
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
NINJA
Description:
Ninja-family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 153864775 | 153868494 | + | Ag5G01574 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 52,686.10 Da | 52.54 | 59.73 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 442 | 467 | 1.0E-5 | IPR032308 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 175 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28910.1 | novel interactor of JAZ. | 0 |
| RefSeq | XP_017219319.1 | PREDICTED: ninja-family protein mc410 [Daucus carota subsp. sativus] | 0 |
| Q53HY2 | Ninja-family protein mc410 OS=Nicotiana tabacum OX=4097 GN=MC410 PE=2 SV=1 | 0 | |
| TrEMBL | A0A161Y5N0 | Ninja-family protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024697 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 59.887856 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 44.964939 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 49.674911 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 47.950394 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 49.356762 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 47.18111 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 49.244492 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 38.869667 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 60.105282 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 64.175003 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 67.052307 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 51.803715 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 52.14402 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 43.166576 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 21.713726 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 21.052689 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 28.322134 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 46.546185 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 32.436314 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 51.691143 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 62.251793 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 68.252846 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 64.054741 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 50.25174 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 48.297115 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 41.043518 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 43.653488 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 31.853243 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 40.115288 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 18.814297 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 12.864944 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 14.312772 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 41.772552 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 38.000019 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 49.880798 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 37.782417 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 25.193468 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 28.437841 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 20.378899 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 15.4201 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.187698 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 77.976311 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 54.650242 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 64.859055 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 63.845982 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 72.128181 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 58.549492 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 73.322418 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 74.502724 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 75.51059 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg32994 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9107 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014596 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g197080 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25035, Sbi_jg8883 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19719 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007755 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42272, Sgl47048 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009698, gene:ENSEOMG00000034558 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0019720, CQ.Regalona.r1.8BG0022690 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30256970, pistato.v30287330 |
| Apiaceae | Apium graveolens | 1 | Ag5G01574 |
| Arecaceae | Cocos nucifera | 3 | contig68859002G000010, scaffold040224G000010 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709495, gene-LOC103715573 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.465.V1.1, AsparagusV1_05.1948.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G21743 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G28910.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025262m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g26880.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g083790.2N, BniB05g008650.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1536 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1590 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g02520 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g16060 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-144 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1127 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003899 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G23273, Lb5G29585, Lb5G29587 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1435, BH05.1605, CH05.1807 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0363610, gene-QOZ80_5BG0411740 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0086350.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_015547 |
| Poaceae | Oryza coarctata | 2 | Oco09G016520, Oco10G016350 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g48500.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G195900, gene-BS78_09G231800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0505755 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G015450, Chr12G021350, Chr18G017210, Chr22G001570 |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G225600, Tel2E01G225700, Tel4E01G165900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG057240, gene_TRIDC2BG015070 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS1A02G389500.1, TraesCS1D02G397600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb343360_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13699, nbis-gene-24888 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g27360, Zma_g28778 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2867, evm.TU.LG23.1069 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g07250 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.443 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13083 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4970 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16844 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.303 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014675 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-22713, nbisL1-mrna-4077 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8261 |
| Salicaceae | Populus euphratica | 2 | populus_peu05617, populus_peu09178 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641083 |
| Solanaceae | Solanum chilense | 1 | SOLCI003483300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020672 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.3940_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1306 |
| Zosteraceae | Zostera marina | 6 | Zosma01g14130.v3.1, Zosma01g14230.v3.1, Zosma02g13690.v3.1 ... |