Basic Information
Locus ID:
Ag5G01567
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
SNF1-related protein kinase regulatory subunit gamma-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 152653329 | 152656389 | - | Ag5G01567 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.67 | 20,556.30 Da | 51.49 | 81.82 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF54631 | CBS-domain pair | 35 | 141 | 1.3E-6 | - |
| Gene3D | G3DSA:3.10.580.10 | - | 6 | 132 | 5.9E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 170 | - | - |
KEGG Pathway
Pathway:
ko04068 (FoxO signaling pathway)
map04068 (FoxO signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04211 (Longevity regulating pathway)
map04211 (Longevity regulating pathway)
ko04213 (Longevity regulating pathway - multiple species)
map04213 (Longevity regulating pathway - multiple species)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15330.1 | Cystathionine beta-synthase (CBS) protein. | 0 |
| RefSeq | XP_017257712.1 | PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Daucus carota subsp. sativus] | 0 |
| Q9XI37 | SNF1-related protein kinase regulatory subunit gamma-like PV42a OS=Arabidopsis thaliana OX=3702 GN=PV42A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6L5B758 | CBS domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_027449 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 31.088263 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 26.692474 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 25.208355 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 28.546772 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 29.962549 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 33.754166 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 26.585524 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 17.833925 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 55.705891 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 54.938892 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 69.2332 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 59.579662 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 64.677193 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 48.517918 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 36.709049 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 35.233391 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 44.932514 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 40.125607 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 43.032478 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 28.36764 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 37.022373 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 48.607506 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 48.096344 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 50.227634 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 50.984966 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 48.68354 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 45.91465 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 40.337292 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 50.775242 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 26.680765 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 36.142139 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 23.657515 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 19.551832 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 21.220562 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 17.139484 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 16.066458 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 15.300666 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 14.709006 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 29.465055 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 25.058657 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 21.725954 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 26.347155 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 38.098122 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 74.103424 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 78.541718 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 21.58758 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 67.115868 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 78.504166 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 99.988907 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 104.384827 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18248 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21400 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010557 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g219480 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11579, Sbi_jg46520 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20832 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005160, GOSA_00005161 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl56389, Sgl61920 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018961, gene:ENSEOMG00000038810 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0009790, CQ.Regalona.r1.9AG0014840 |
| Apiaceae | Apium graveolens | 5 | Ag5G01567, Ag9G01173, Ag9G01176, AgUnG01435, AgUnG01437 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G000070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710138 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1583.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G01751 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G15330.1, AT1G80090.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008048m.g.v1.0, Thhalv10019455m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g13650.v2.2, Sp5g35710.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g040650.2N, BniB06g068750.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0324 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0338 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.489 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027744 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb7G34090, Lb7G34356 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.424, BH07.549, CH07.411 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0102130, gene-QOZ80_2BG0155470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0564660.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G002840, Oco04G002820 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g06410.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G043900, gene-BS78_K002300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0202563, Pt_Chr0202581 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G258400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG017850, gene_TRIDC6BG023620 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G132700.1, TraesCS6B02G160900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb232620_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-33705, nbis-gene-33706 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12214 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1255, evm.TU.LG07.1779, evm.TU.LG11.603 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3652 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11576 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21762 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.331 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004095 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16326 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21393 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598778 |
| Solanaceae | Solanum chilense | 1 | SOLCI003611400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107022738 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10150 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2212 |
| Zosteraceae | Zostera marina | 1 | Zosma06g25850.v3.1 |