halophFGD

Basic Information

Locus ID: Ag5G01561

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the DEAD box helicase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	151596433	151599767	+	Ag5G01561

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.37	46,664.80 Da	46.39	90.53	-0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd17939	DEADc_EIF4A	43	240	4.90968E-135	-
CDD	cd18787	SF2_C_DEAD	251	381	5.19758E-61	-
Pfam	PF00270	DEAD/DEAH box helicase	63	224	1.1E-39	IPR011545
Pfam	PF00271	Helicase conserved C-terminal domain	264	372	6.7E-29	IPR001650
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	107	392	8.99E-75	IPR027417
Gene3D	G3DSA:3.40.50.300	-	247	411	1.0E-58	IPR027417
Gene3D	G3DSA:3.40.50.300	-	28	246	8.6E-67	IPR027417
SMART	SM00487	ultradead3	57	254	9.1E-56	IPR014001
SMART	SM00490	helicmild6	291	372	1.5E-31	IPR001650
ProSiteProfiles	PS51192	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	69	239	28.874578	IPR014001
ProSiteProfiles	PS51194	Superfamilies 1 and 2 helicase C-terminal domain profile.	250	411	25.964989	IPR001650
ProSiteProfiles	PS51195	DEAD-box RNA helicase Q motif profile.	38	66	10.433057	IPR014014
ProSitePatterns	PS00039	DEAD-box subfamily ATP-dependent helicases signature.	185	193	-	IPR000629

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0003724 (RNA helicase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K03257 (translation initiation factor 4A)

Pathway:

ko03013 (Nucleocytoplasmic transport) map03013 (Nucleocytoplasmic transport)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G54270.1	eif4a-2. member of eIF4A - eukaryotic initiation factor 4A
RefSeq	XP_017223212.1	PREDICTED: eukaryotic initiation factor 4A-8 [Daucus carota subsp. sativus]
Swiss-Prot	P41381	Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
TrEMBL	A0A5E4E3D0	Eukaryotic initiation factor 4A-11 OS=Prunus dulcis OX=3755 GN=ALMOND_2B005635 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	95.661476	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	72.180611	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	80.178741	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	86.517891	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	86.816971	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	97.251083	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	94.736504	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	98.693497	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	114.623337	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	107.901794	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	119.275856	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	146.789185	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	131.626968	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	147.500565	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	86.117104	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	88.982567	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	82.153267	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	66.580673	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	65.89933	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	87.030174	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	80.783279	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	129.379349	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	138.244049	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	119.887421	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	112.982437	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	93.989326	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	74.86731	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	73.147995	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	84.214211	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	65.400368		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	55.33107		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	59.625412		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	147.073807		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	126.382629		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	132.889633		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	108.924011		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	93.165039		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	119.541382		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	55.798939	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	29.130878	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	16.576183	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	139.876556	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	85.138039	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	166.384033	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	127.192833	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	139.915344	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	107.079483	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	114.551483	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	97.669975	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	94.807152	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg18030, jg23950, jg27270, jg36647, jg36903, jg4590, jg4640 ... jg7945
Aizoaceae	Mesembryanthemum crystallinum	4	gene_6755, gene_8081, gene_8082, gene_9431
Amaranthaceae	Atriplex hortensis	2	Ah015581, Ah034500
Amaranthaceae	Beta vulgaris	3	BVRB_2g034400, BVRB_8g189830, BVRB_9g203030
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg19755, Sbi_jg19756, Sbi_jg23471, Sbi_jg23473 ... Sbi_jg59412, Sbi_jg63236
Amaranthaceae	Salicornia europaea	3	Seu_jg17278, Seu_jg17279, Seu_jg23657
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00011237, GOSA_00028107, GOSA_00028109
Amaranthaceae	Suaeda glauca	4	Sgl43089, Sgl47901, Sgl63656, Sgl68153
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000011237, gene:ENSEOMG00000016890 ... gene:ENSEOMG00000018752, gene:ENSEOMG00000019246, gene:ENSEOMG00000019465, gene:ENSEOMG00000020731, gene:ENSEOMG00000031858, gene:ENSEOMG00000045672, gene:ENSEOMG00000050432, gene:ENSEOMG00000051256
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.2AG0014060, CQ.Regalona.r1.2AG0014070 ... CQ.Regalona.r1.2BG0016020, CQ.Regalona.r1.2BG0016030, CQ.Regalona.r1.8AG0013490, CQ.Regalona.r1.8BG0014820
Anacardiaceae	Pistacia vera	5	pistato.v30117410, pistato.v30224710, pistato.v30224730 ... pistato.v30259600, pistato.v30261340
Apiaceae	Apium graveolens	7	Ag5G01561, Ag7G00390, Ag7G01853, Ag8G00261, Ag8G01983 ... AgUnG00091, AgUnG00092
Arecaceae	Cocos nucifera	6	COCNU_02G001330, COCNU_02G019540, COCNU_03G015520 ... COCNU_09G006150, COCNU_11G013450, COCNU_11G013460
Arecaceae	Phoenix dactylifera	7	gene-LOC103702037, gene-LOC103709577, gene-LOC103713107 ... gene-LOC103713109, gene-LOC103715524, gene-LOC103717373, gene-LOC103723891
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.2362.V1.1, AsparagusV1_01.621.V1.1 ... AsparagusV1_05.2352.V1.1, AsparagusV1_06.1043.V1.1
Asteraceae	Flaveria trinervia	7	Ftri13G30554, Ftri15G17613, Ftri3G12718, Ftri3G20538 ... Ftri4G15456, Ftri7G08567, Ftri8G25313
Brassicaceae	Arabidopsis thaliana	5	AT1G51380.1, AT1G54270.1, AT1G72730.1, AT3G13920.2 ... AT3G19760.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10011528m.g.v1.0, Thhalv10011544m.g.v1.0 ... Thhalv10018626m.g.v1.0, Thhalv10020824m.g.v1.0, Thhalv10020832m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp1g38030.v2.2, Sp1g40700.v2.2, Sp3g12160.v2.2 ... Sp3g17780.v2.2, Sp5g27790.v2.2
Brassicaceae	Brassica nigra	13	BniB01g044200.2N, BniB01g051250.2N, BniB01g055170.2N ... BniB02g063060.2N, BniB03g050960.2N, BniB05g070020.2N, BniB06g026370.2N, BniB07g001610.2N, BniB07g004620.2N, BniB07g030750.2N, BniB07g030780.2N, BniB07g051010.2N, BniB07g055250.2N
Casuarinaceae	Casuarina equisetifolia	10	Ceq01G0301, Ceq01G0309, Ceq02G0842, Ceq03G2284, Ceq05G0696 ... Ceq06G0836, Ceq06G1704, Ceq06G2354, Ceq09G0627, Ceq09G0628
Casuarinaceae	Casuarina glauca	10	Cgl01G0321, Cgl02G0856, Cgl03G2420, Cgl05G0707, Cgl06G0861 ... Cgl06G1766, Cgl06G2478, Cgl09G0671, Cgl09G0672, Cgl09G0684
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno12g04520, gene.Cymno13g02290, gene.Cymno17g04600
Dunaliellaceae	Dunaliella salina	3	Dusal.0006s00020.v1.0, Dusal.0552s00009.v1.0 ... Dusal.0888s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g03840, gene.Thate02g00760, gene.Thate05g18780
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-231, nbisL1-mrna-3338, nbisL1-mrna-4598 ... nbisL1-mrna-7482, nbisL1-mrna-9392
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.89, evm.TU.LG03.943, evm.TU.LG07.1262 ... evm.TU.LG07.652
Plantaginaceae	Plantago ovata	3	Pov_00003711, Pov_00013441, Pov_00015332
Plumbaginaceae	Limonium bicolor	9	Lb0G36968, Lb2G08398, Lb2G14201, Lb2G14216, Lb3G16956 ... Lb3G16957, Lb3G18035, Lb3G18041, Lb4G21541
Poaceae	Echinochloa crus-galli	12	AH06.2865, AH07.361, AH07.4042, AH07.880, BH06.2663 ... BH07.1009, BH07.3856, CH01.1256, CH03.4462, CH06.2976, CH07.3921, CH07.761
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_2AG0101490, gene-QOZ80_2AG0151600 ... gene-QOZ80_2BG0154870, gene-QOZ80_2BG0206970, gene-QOZ80_4AG0307350, gene-QOZ80_5AG0399360, gene-QOZ80_5BG0448050, gene-QOZ80_6AG0549840, gene-QOZ80_6BG0503410
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0210840.1, HORVU.MOREX.r3.6HG0558540.1 ... HORVU.MOREX.r3.6HG0633530.1, HORVU.MOREX.r3.7HG0702610.1, HORVU.MOREX.r3.7HG0727510.1
Poaceae	Lolium multiflorum	7	gene-QYE76_006390, gene-QYE76_006463, gene-QYE76_008284 ... gene-QYE76_020352, gene-QYE76_021631, gene-QYE76_035484, gene-QYE76_035764
Poaceae	Oryza coarctata	11	Oco01G015450, Oco02G015790, Oco03G002380, Oco03G005800 ... Oco03G005810, Oco04G002300, Oco04G006020, Oco06G017810, Oco11G016450, Oco12G016700, Oco21G004410
Poaceae	Paspalum vaginatum	5	gene-BS78_03G064300, gene-BS78_03G064700 ... gene-BS78_04G036500, gene-BS78_04G090300, gene-BS78_10G253900
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0401086, Pt_Chr0604848, Pt_Chr0605387
Poaceae	Sporobolus alterniflorus	13	Chr02G032810, Chr04G019820, Chr05G001030, Chr06G020750 ... Chr06G035000, Chr09G026920, Chr0G010140, Chr10G021450, Chr11G001120, Chr13G000230, Chr15G026290, Chr19G007120, Chr27G009790
Poaceae	Thinopyrum elongatum	8	Tel2E01G942100, Tel5E01G690000, Tel6E01G254100 ... Tel6E01G368300, Tel6E01G775100, Tel6E01G775300, Tel7E01G532700, Tel7E01G703700
Poaceae	Triticum dicoccoides	9	gene_TRIDC6AG015330, gene_TRIDC6AG027230 ... gene_TRIDC6AG027280, gene_TRIDC6AG061100, gene_TRIDC6BG021100, gene_TRIDC6BG033410, gene_TRIDC6BG071460, gene_TRIDC7AG058390, gene_TRIDC7BG051060
Poaceae	Triticum aestivum	19	TraesCS2A02G552800.1, TraesCS2B02G584200.1 ... TraesCS2D02G553400.1, TraesCS2D02G554300.1, TraesCS6A02G116200.1, TraesCS6A02G186600.1, TraesCS6A02G186800.1, TraesCS6A02G416700.1, TraesCS6B02G144000.1, TraesCS6B02G217700.1, TraesCS6B02G217800.1, TraesCS6B02G472700.1, TraesCS6D02G105000.1, TraesCS6D02G173700.3, TraesCS6D02G401900.1, TraesCS7A02G310000.1, TraesCS7A02G419400.1, TraesCS7B02G320000.1, TraesCS7D02G412200.1
Poaceae	Zea mays	6	Zm00001eb190630_P001, Zm00001eb226920_P001 ... Zm00001eb232200_P002, Zm00001eb240040_P001, Zm00001eb259470_P001, Zm00001eb272920_P004
Poaceae	Zoysia japonica	6	nbis-gene-29965, nbis-gene-33746, nbis-gene-34308 ... nbis-gene-40699, nbis-gene-47426, nbis-gene-9633
Poaceae	Zoysia macrostachya	6	Zma_g12187, Zma_g14948, Zma_g17479, Zma_g26194, Zma_g31084 ... Zma_g33349
Portulacaceae	Portulaca oleracea	9	evm.TU.LG03.1988, evm.TU.LG05.2220, evm.TU.LG07.802 ... evm.TU.LG08.1559, evm.TU.LG14.287, evm.TU.LG15.127, evm.TU.LG19.20, evm.TU.LG22.453, evm.TU.LG24.250
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g10950, gene.Posoc10g04890
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_10_RagTag.1375 ... evm.TU.Scaffold_10_RagTag.694, evm.TU.Scaffold_15_RagTag.341, evm.TU.Scaffold_17_RagTag.669, evm.TU.Scaffold_18_RagTag.687, evm.TU.Scaffold_4_RagTag.1818
Rhizophoraceae	Carallia pectinifolia	10	nbisL1-mrna-13797, nbisL1-mrna-17178, nbisL1-mrna-23352 ... nbisL1-mrna-25759, nbisL1-mrna-26612, nbisL1-mrna-27630, nbisL1-mrna-27668, nbisL1-mrna-27671, nbisL1-mrna-27709, nbisL1-mrna-7111
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-14506, nbisL1-mrna-7676, nbisL1-mrna-8093 ... nbisL1-mrna-8888, nbisL1-mrna-8954
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-19994, nbisL1-mrna-4611, nbisL1-mrna-8066 ... nbisL1-mrna-8747, nbisL1-mrna-8945
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000001l.210, evm.TU.utg000004l.50 ... evm.TU.utg000008l.1027, evm.TU.utg000013l.359, evm.TU.utg000023l.38, evm.TU.utg000033l.487
Rhizophoraceae	Kandelia obovata	6	Maker00000055, Maker00004182, Maker00004381, Maker00004787 ... Maker00014572, Maker00018900
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-10750, nbisL1-mrna-13992, nbisL1-mrna-14858 ... nbisL1-mrna-16464, nbisL1-mrna-18333, nbisL1-mrna-3900
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-1116, nbisL1-mrna-14378, nbisL1-mrna-14846 ... nbisL1-mrna-22898, nbisL1-mrna-2625, nbisL1-mrna-8022, nbisL1-mrna-8172
Salicaceae	Populus euphratica	11	populus_peu02609, populus_peu02613, populus_peu12625 ... populus_peu13947, populus_peu22056, populus_peu22065, populus_peu23152, populus_peu24345, populus_peu26593, populus_peu28337, populus_peu37881
Solanaceae	Lycium barbarum	7	gene-LOC132604232, gene-LOC132604234, gene-LOC132613923 ... gene-LOC132619740, gene-LOC132635930, gene-LOC132640847, gene-LOC132645464
Solanaceae	Solanum chilense	5	SOLCI000318900, SOLCI001353000, SOLCI002413600 ... SOLCI003389300, SOLCI003577100
Solanaceae	Solanum pennellii	6	gene-LOC107004776, gene-LOC107007006, gene-LOC107007007 ... gene-LOC107022595, gene-LOC107024598, gene-LOC107028541
Tamaricaceae	Reaumuria soongarica	6	STRG.21618_chr08_-, STRG.32344_chr09_-, STRG.8158_chr05_- ... gene_14265, gene_3999, gene_505
Tamaricaceae	Tamarix chinensis	5	TC02G1339, TC05G0391, TC05G1664, TC06G2628, TC11G1425
Zosteraceae	Zostera marina	4	Zosma04g15770.v3.1, Zosma04g15790.v3.1, Zosma05g19360.v3.1 ... Zosma06g26830.v3.1