halophFGD

Basic Information

Locus ID: Ag5G01558

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: U-box domain-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	150505219	150509354	-	Ag5G01558

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.95	83,881.54 Da	42.46	90.31	-0.27

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01989	STK_N	3	158	9.60545E-36	-
CDD	cd16655	RING-Ubox_WDSUB1_like	682	722	3.51086E-17	-
Pfam	PF04564	U-box domain	679	744	1.5E-16	IPR003613
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	400	652	8.8E-38	IPR001245
SUPERFAMILY	SSF57850	RING/U-box	675	744	2.91E-23	-
SUPERFAMILY	SSF52402	Adenine nucleotide alpha hydrolases-like	14	157	3.1E-9	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	381	651	7.15E-65	IPR011009
Gene3D	G3DSA:3.40.50.620	HUPs	5	163	4.9E-11	IPR014729
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	470	677	5.2E-44	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	678	749	7.0E-27	IPR013083
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	388	469	2.0E-21	-
SMART	SM00220	serkin_6	396	659	3.5E-28	IPR000719
SMART	SM00504	Ubox_2	681	743	4.9E-25	IPR003613
ProSiteProfiles	PS50011	Protein kinase domain profile.	396	684	33.983097	IPR000719
ProSiteProfiles	PS51698	U-box domain profile.	677	750	28.042635	IPR003613
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	514	526	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	402	423	-	IPR017441
MobiDBLite	mobidb-lite	consensus disorder prediction	233	264	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	223	264	-	-
Coils	Coil	Coil	348	368	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation) GO:0016567 (protein ubiquitination)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004842 (ubiquitin-protein transferase activity) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G57035.1	U-box domain-containing protein kinase family protein.
RefSeq	XP_017215759.1	PREDICTED: U-box domain-containing protein 34-like [Daucus carota subsp. sativus]
Swiss-Prot	Q8S8S7	U-box domain-containing protein 34 OS=Arabidopsis thaliana OX=3702 GN=PUB34 PE=3 SV=1
TrEMBL	A0A164TJ16	RING-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024716 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.774073	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.196711	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.509023	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.432732	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.29736	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.05264	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.61546	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.311825	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	1.861272	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	2.898958	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	3.471508	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.177585	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	3.447404	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	2.570019	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.4599	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.106015	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.075253	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	2.662574	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.297001	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	7.623417	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	6.889569	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.081454	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.185514	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.066423	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.037193	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.101955	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.136993	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.298582	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.523673	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.095584		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.024285		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.06474		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	4.260785		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.171115		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	4.293421		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	3.024978		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.412872		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	2.245813		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.695943	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.873874	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.391032	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	5.982977	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	1.432416	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	2.059581	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	2.103478	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	3.322854	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	2.72796	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.830436	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.754314	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.619286	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg31732, jg32904
Aizoaceae	Mesembryanthemum crystallinum	2	gene_9351, gene_9352
Amaranthaceae	Atriplex hortensis	1	Ah015199
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg24603, Sbi_jg8462
Amaranthaceae	Salicornia europaea	1	Seu_jg20128
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00014730
Amaranthaceae	Suaeda glauca	2	Sgl42895, Sgl47687
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000010444, gene:ENSEOMG00000044953
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.8BG0016300
Anacardiaceae	Pistacia vera	1	pistato.v30259650
Apiaceae	Apium graveolens	2	Ag2G02468, Ag5G01558
Arecaceae	Cocos nucifera	1	COCNU_02G000920
Arecaceae	Phoenix dactylifera	1	gene-LOC103709628
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.2297.V1.1, AsparagusV1_06.1459.V1.1
Asteraceae	Flaveria trinervia	1	Ftri8G01336
Brassicaceae	Arabidopsis thaliana	2	AT2G19410.1, AT5G57035.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10012732m.g.v1.0, Thhalv10022572m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp3g32790.v2.2, Sp3g32800.v2.2, Sp6g18750.v2.2
Brassicaceae	Brassica nigra	6	BniB02g015510.2N, BniB02g036230.2N, BniB03g068640.2N ... BniB04g025040.2N, BniB04g025050.2N, BniB08g014030.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G0831
Casuarinaceae	Casuarina glauca	1	Cgl06G0857
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno12g00990, gene.Cymno16g01130
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g18860
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG07.1265
Plantaginaceae	Plantago ovata	1	Pov_00039627
Plumbaginaceae	Limonium bicolor	2	Lb1G05154, Lb3G16947
Poaceae	Echinochloa crus-galli	6	AH06.2096, AH07.857, BH05.964, BH07.992, CH06.2145, CH07.741
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0106310, gene-QOZ80_2BG0159880 ... gene-QOZ80_6AG0543530, gene-QOZ80_6BG0496800
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.6HG0579590.1, HORVU.MOREX.r3.7HG0716320.1
Poaceae	Lolium multiflorum	4	gene-QYE76_015963, gene-QYE76_021686, gene-QYE76_034596 ... gene-QYE76_041697
Poaceae	Oryza coarctata	3	Oco04G005890, Oco11G011640, Oco12G011750
Poaceae	Oryza sativa	2	LOC_Os02g12670.1, LOC_Os06g37620.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G088500, gene-BS78_10G173700
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0202007, Pt_Chr0601857
Poaceae	Sporobolus alterniflorus	4	Chr02G029340, Chr05G007030, Chr10G016870, Chr11G005540
Poaceae	Thinopyrum elongatum	2	Tel6E01G365300, Tel7E01G615000
Poaceae	Triticum dicoccoides	4	gene_TRIDC6AG026870, gene_TRIDC6BG033010 ... gene_TRIDC7AG050860, gene_TRIDC7BG043020
Poaceae	Triticum aestivum	5	TraesCS6B02G213500.2, TraesCS6D02G172100.1 ... TraesCS7A02G364200.2, TraesCS7B02G263700.1, TraesCS7D02G359000.1
Poaceae	Zea mays	2	Zm00001eb205230_P001, Zm00001eb385250_P001
Poaceae	Zoysia japonica	1	nbis-gene-41148
Poaceae	Zoysia macrostachya	1	Zma_g32976
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.2349, evm.TU.LG07.258, evm.TU.LG15.695 ... evm.TU.LG23.582
Posidoniaceae	Posidonia oceanica	1	gene.Posoc09g10330
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_10_RagTag.540
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-12982
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-12785
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-16926
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000033l.377
Rhizophoraceae	Kandelia obovata	1	Maker00014830
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-4005
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-8167
Salicaceae	Populus euphratica	1	populus_peu11909
Solanaceae	Lycium barbarum	1	gene-LOC132618043
Solanaceae	Solanum chilense	2	SOLCI004414200, SOLCI005557000
Solanaceae	Solanum pennellii	2	gene-LOC107005811, gene-LOC107025999
Tamaricaceae	Reaumuria soongarica	1	gene_3218
Tamaricaceae	Tamarix chinensis	3	TC01G2027, TC04G1940, TC10G1798
Zosteraceae	Zostera marina	2	Zosma01g03350.v3.1, Zosma05g05940.v3.1