Basic Information
Locus ID:
Ag5G01535
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 145299161 | 145304579 | - | Ag5G01535 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 39,483.58 Da | 42.23 | 101.05 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 7 | 262 | 2.75E-27 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 137 | 288 | 5.5E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 136 | 2.4E-6 | IPR015943 |
| SMART | SM00320 | WD40_4 | 168 | 207 | 0.18 | IPR001680 |
| SMART | SM00320 | WD40_4 | 2 | 34 | 29.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 211 | 255 | 47.0 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30510.1 | homolog of yeast autophagy 18 (ATG18) B. | 0 |
| RefSeq | XP_017216251.1 | PREDICTED: autophagy-related protein 18b isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q8H1Q8 | Autophagy-related protein 18b OS=Arabidopsis thaliana OX=3702 GN=ATG18B PE=2 SV=2 | 0 | |
| TrEMBL | A0A164TJS1 | Autophagy-related protein 18b OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_031935 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 7.900071 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.217639 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 8.12995 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.225405 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 8.110635 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.784435 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.422519 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.082412 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 6.385562 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 7.30627 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 6.590138 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.190763 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 5.753761 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.24878 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 5.440545 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 5.114851 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.514868 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 6.308772 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.752826 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.830738 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 8.467004 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.355226 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.433553 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.614347 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 5.746027 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.724472 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 6.327199 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.528505 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.136201 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 2.91241 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.81758 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.137461 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.434026 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.447971 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 9.831364 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.202672 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.111355 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.16229 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.672635 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.772232 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.73566 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 7.745659 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.911605 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 6.328037 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 7.80197 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 7.215874 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.460401 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 8.457654 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.46647 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 8.006987 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg31504, jg31508, jg31715, jg39224 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9206 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014891 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g191900 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg24799, Sbi_jg8667, Sbi_jg8668 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19941 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022255 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42544, Sgl47298 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010057, gene:ENSEOMG00000032734 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0017410, CQ.Regalona.r1.8BG0018450 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30264620, pistato.v30265120 |
| Apiaceae | Apium graveolens | 1 | Ag5G01535 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G012380 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710459 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2582.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G27477 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G30510.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025790m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g28400.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g084790.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2651 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2793 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g07520 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0460s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g29810 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.368 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000707 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G26608 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3751, BH07.3577, CH07.3643 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0148630, gene-QOZ80_2BG0204010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0623190.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_026060 |
| Poaceae | Oryza coarctata | 2 | Oco03G023990, Oco04G024520 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g54910.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G303200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202914 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr06G000590, Chr09G017910, Chr11G014680, Chr13G002100 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G628100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG053180, gene_TRIDC6BG061740 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G353600.1, TraesCS6B02G386200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb257610_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8453 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14604 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g19270 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.197 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13387 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4239 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.129 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014569 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16638 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14583 |
| Salicaceae | Populus euphratica | 1 | populus_peu05536 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132602898 |
| Solanaceae | Solanum chilense | 1 | SOLCI007331500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024325 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.12580_chr02_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0939 |
| Zosteraceae | Zostera marina | 1 | Zosma03g12480.v3.1 |