halophFGD

Basic Information

Locus ID: Ag5G01533

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the universal ribosomal protein uS3 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	145096381	145099187	+	Ag5G01533

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.68	27,322.66 Da	35.30	95.49	-0.19

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd02413	40S_S3_KH	15	95	3.36564E-52	-
Pfam	PF00189	Ribosomal protein S3, C-terminal domain	106	188	4.5E-25	IPR001351
Pfam	PF07650	KH domain	20	93	1.1E-12	IPR004044
SUPERFAMILY	SSF54821	Ribosomal protein S3 C-terminal domain	93	190	6.28E-28	IPR036419
SUPERFAMILY	SSF54814	Prokaryotic type KH domain (KH-domain type II)	10	99	1.09E-25	IPR009019
Gene3D	G3DSA:3.30.1140.32	-	93	219	9.8E-67	IPR036419
Gene3D	G3DSA:3.30.300.20	-	1	91	6.0E-48	IPR015946
TIGRFAM	TIGR01008	uS3_euk_arch: ribosomal protein uS3	8	210	4.5E-71	IPR005703
ProSiteProfiles	PS50823	Type-2 KH domain profile.	21	92	11.333969	IPR004044
ProSitePatterns	PS00548	Ribosomal protein S3 signature.	147	183	-	IPR018280

Gene Ontology

Biological Process:

GO:0006412 (translation)

Molecular Function:

GO:0003723 (RNA binding) GO:0003735 (structural constituent of ribosome)

Cellular Component:

GO:0015935 (small ribosomal subunit)

KEGG Pathway

KO Term:

K02985 (small subunit ribosomal protein S3e)

Pathway:

ko03010 (Ribosome) map03010 (Ribosome)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G35530.1	Ribosomal protein S3 family protein.
RefSeq	XP_017215294.1	PREDICTED: 40S ribosomal protein S3-2-like [Daucus carota subsp. sativus]
Swiss-Prot	Q9FJA6	Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1
TrEMBL	A0A161ZMX6	KH type-2 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024734 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	209.279266	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	152.30658	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	125.221619	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	124.978691	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	139.025391	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	144.95723	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	110.845741	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	103.300293	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	319.123535	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	315.824219	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	310.592743	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	371.805359	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	319.924438	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	367.639435	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	132.904251	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	168.864594	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	162.007599	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	160.062042	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	147.907928	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	192.733582	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	176.010452	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	250.778641	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	259.786346	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	240.206024	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	232.777893	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	164.800446	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	157.783157	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	154.85701	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	181.002045	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	160.182465		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	212.795792		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	229.871658		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	186.989792		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	248.936813		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	166.737045		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	282.749054		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	217.245056		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	230.77359		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	245.601837	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	99.844574	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	59.213043	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	169.431137	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	167.216141	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	537.775696	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	339.374023	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	224.53743	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	297.122528	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	372.727325	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	343.544312	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	350.808136	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg15374, jg25206, jg31747, jg32882, jg36625
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10991, gene_13126
Amaranthaceae	Atriplex hortensis	4	Ah015266, Ah031573, Ah037672, Ah037674
Amaranthaceae	Beta vulgaris	2	BVRB_2g034020, BVRB_2g038660
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg24630, Sbi_jg26824, Sbi_jg33740, Sbi_jg8492
Amaranthaceae	Salicornia europaea	2	Seu_jg20101, Seu_jg8433
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00007094, GOSA_00014689
Amaranthaceae	Suaeda glauca	3	Sgl23906, Sgl29075, Sgl47607
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000007207, gene:ENSEOMG00000008791 ... gene:ENSEOMG00000021235, gene:ENSEOMG00000025770, gene:ENSEOMG00000032905, gene:ENSEOMG00000044681
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.3BG0017200, CQ.Regalona.r1.5AG0011750 ... CQ.Regalona.r1.5BG0012510, CQ.Regalona.r1.8AG0015380, CQ.Regalona.r1.8BG0016620
Anacardiaceae	Pistacia vera	2	pistato.v30259900, pistato.v30261030
Apiaceae	Apium graveolens	3	Ag10G01428, Ag5G01533, Ag8G00281
Arecaceae	Cocos nucifera	4	COCNU_08G005670, COCNU_09G000700, contig69448580G000010 ... scaffold007470G000050
Arecaceae	Phoenix dactylifera	8	gene-LOC103696489, gene-LOC103703275, gene-LOC103704894 ... gene-LOC103705774, gene-LOC103712746, gene-LOC120103712, gene-LOC120103821, gene-LOC120111690
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.1216.V1.1, AsparagusV1_04.1015.V1.1 ... AsparagusV1_07.3633.V1.1
Asteraceae	Flaveria trinervia	5	Ftri13G24352, Ftri13G25174, Ftri13G27803, Ftri18G02710 ... Ftri3G28550
Brassicaceae	Arabidopsis thaliana	3	AT2G31610.1, AT3G53870.1, AT5G35530.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10017144m.g.v1.0, Thhalv10017148m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp4g14040.v2.2, Sp7g06820.v2.2, SpUn1065_0010.v2.2
Brassicaceae	Brassica nigra	7	BniB01g012680.2N, BniB05g059030.2N, BniB06g020590.2N ... BniB06g020620.2N, BniB08g019640.2N, BniB08g019730.2N, BniB08g031780.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0822, Ceq03G2135, Ceq06G0805
Casuarinaceae	Casuarina glauca	4	Cgl02G0832, Cgl02G0837, Cgl03G2279, Cgl06G0830
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno04g10730, gene.Cymno09g01280, gene.Cymno11g10040
Dunaliellaceae	Dunaliella salina	1	Dusal.0669s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate02g23420, gene.Thate05g04960, gene.Thate05g25710 ... gene.Thate07g06260
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-179
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG05.1011, evm.TU.LG05.1018, evm.TU.LG07.679
Plantaginaceae	Plantago ovata	5	Pov_00002892, Pov_00003049, Pov_00004056, Pov_00010292 ... Pov_00039579
Plumbaginaceae	Limonium bicolor	1	Lb6G30919
Poaceae	Echinochloa crus-galli	6	AH03.3662, AH08.415, BH08.426, CH03.4107, CH03.4189 ... CH08.500
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_7AG0576570, gene-QOZ80_7BG0608020 ... gene-QOZ80_8AG0618610, gene-QOZ80_8BG0646090
Poaceae	Lolium multiflorum	4	gene-QYE76_032741, gene-QYE76_032771, gene-QYE76_039751 ... gene-QYE76_039759
Poaceae	Oryza coarctata	3	Oco13G012360, Oco15G002790, Oco16G002810
Poaceae	Oryza sativa	2	LOC_Os03g38000.1, LOC_Os07g41750.1
Poaceae	Paspalum vaginatum	2	gene-BS78_02G346400, gene-BS78_07G055500
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0101329, Pt_Chr0101332, Pt_Chr0306244, Pt_Chr0306302 ... Pt_Chr0402338
Poaceae	Sporobolus alterniflorus	9	Chr0G018860, Chr16G001820, Chr17G001670, Chr19G002510 ... Chr20G011600, Chr27G007100, Chr27G014810, Chr28G011370, Chr29G011000
Poaceae	Thinopyrum elongatum	2	Tel2E01G335900, Tel7E01G510000
Poaceae	Triticum dicoccoides	5	gene_TRIDC2AG021810, gene_TRIDC2BG026230 ... gene_TRIDC3AG013230, gene_TRIDC3AG013240, gene_TRIDC7BG032110
Poaceae	Triticum aestivum	7	TraesCS2A02G172000.1, TraesCS2B02G198400.1 ... TraesCS2D02G179300.1, TraesCS3A02G107700.1, TraesCS3A02G107800.1, TraesCS7B02G198400.1, TraesCS7D02G291300.1
Poaceae	Zea mays	3	Zm00001eb172130_P001, Zm00001eb327250_P001 ... Zm00001eb415410_P001
Poaceae	Zoysia japonica	2	nbis-gene-39012, nbis-gene-41674
Poaceae	Zoysia macrostachya	2	Zma_g22526, Zma_g23665
Portulacaceae	Portulaca oleracea	9	evm.TU.LG02.2379, evm.TU.LG02.2383, evm.TU.LG02.2386 ... evm.TU.LG03.1852, evm.TU.LG07.826, evm.TU.LG15.106, evm.TU.LG23.605, evm.TU.LG23.607, evm.TU.LG23.611
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g25410, gene.Posoc08g04100, gene.Posoc09g10210
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_10_RagTag.556, evm.TU.Scaffold_12_RagTag.322 ... evm.TU.Scaffold_13_RagTag.763, evm.TU.Scaffold_4_RagTag.1799
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-12961, nbisL1-mrna-24475, nbisL1-mrna-25777 ... nbisL1-mrna-30276, nbisL1-mrna-30288, nbisL1-mrna-8211
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-13672, nbisL1-mrna-19720, nbisL1-mrna-3067
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-16136, nbisL1-mrna-19598, nbisL1-mrna-4593
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000008l.1014, evm.TU.utg000015l.446 ... evm.TU.utg000027l.378, evm.TU.utg000033l.393
Rhizophoraceae	Kandelia obovata	4	Maker00000839, Maker00014964, Maker00015426, Maker00018253
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-14868, nbisL1-mrna-3990, nbisL1-mrna-4365 ... nbisL1-mrna-5605
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-1099, nbisL1-mrna-11821, nbisL1-mrna-15042 ... nbisL1-mrna-8144
Salicaceae	Populus euphratica	5	populus_peu12591, populus_peu22390, populus_peu28589 ... populus_peu30057, populus_peu37919
Solanaceae	Lycium barbarum	3	gene-LOC132617574, gene-LOC132635969, gene-LOC132640861
Solanaceae	Solanum chilense	3	SOLCI005676900, SOLCI006031400, SOLCI007239300
Solanaceae	Solanum pennellii	3	gene-LOC107026246, gene-LOC107028724, gene-LOC107028851
Tamaricaceae	Reaumuria soongarica	3	STRG.17704_chr09_-, STRG.32761_chr09_-, gene_13387
Tamaricaceae	Tamarix chinensis	2	TC10G1833, TC11G2035
Zosteraceae	Zostera marina	3	Zosma01g10380.v3.1, Zosma03g25530.v3.1, Zosma06g13210.v3.1