halophFGD

Basic Information

Locus ID: Ag5G01500

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: PRK3

Description: receptor-like protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	134190178	134192351	+	Ag5G01500

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.66	71,222.88 Da	42.90	88.74	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13855	Leucine rich repeat	119	178	1.5E-8	IPR001611
Pfam	PF00069	Protein kinase domain	372	636	3.2E-28	IPR000719
Pfam	PF08263	Leucine rich repeat N-terminal domain	26	66	5.3E-8	IPR013210
SUPERFAMILY	SSF52058	L domain-like	51	209	2.57E-30	-
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	372	639	9.98E-49	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	444	643	5.2E-39	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	138	186	5.0E-13	IPR032675
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	335	443	2.4E-14	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	26	137	2.5E-21	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	187	233	3.9E-5	IPR032675
ProSiteProfiles	PS50011	Protein kinase domain profile.	368	644	27.071569	IPR000719
MobiDBLite	mobidb-lite	consensus disorder prediction	308	342	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	296	342	-	-
Coils	Coil	Coil	632	644	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G42880.1	Leucine-rich repeat protein kinase family protein.
RefSeq	XP_017217958.1	PREDICTED: pollen receptor-like kinase 3 [Daucus carota subsp. sativus]
Swiss-Prot	Q9M1L7	Pollen receptor-like kinase 3 OS=Arabidopsis thaliana OX=3702 GN=PRK3 PE=1 SV=1
TrEMBL	A0A164TKW2	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024766 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.274359	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.281765	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.249421	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.120874	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.616998	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.357616	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.155745	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.437291	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.266189	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.096481	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.039747	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.037091	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.12845	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.060332	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.140544	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.058115	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.069591	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	6.393819		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	2.371045		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	2.38234		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.284932		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	190.367966		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.566835		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.574343		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.481725		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.150512		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0.663178	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.801862	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.730405	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.268265	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.266896	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.027665	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.070728	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.396992	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	35.740837	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	268.030609	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	237.565369	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg17994, jg25174, jg27297, jg31769
Aizoaceae	Mesembryanthemum crystallinum	2	gene_6704, gene_9254
Amaranthaceae	Atriplex hortensis	2	Ah015039, Ah028750
Amaranthaceae	Beta vulgaris	2	BVRB_7g169720, BVRB_8g190720
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg2014, Sbi_jg24709, Sbi_jg34487, Sbi_jg8572
Amaranthaceae	Salicornia europaea	2	Seu_jg20029, Seu_jg2753
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00002818, GOSA_00022694
Amaranthaceae	Suaeda glauca	7	Sgl42748, Sgl42752, Sgl47495, Sgl47508, Sgl47512, Sgl73443 ... Sgl76967
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000007005, gene:ENSEOMG00000009919 ... gene:ENSEOMG00000030113, gene:ENSEOMG00000038330, gene:ENSEOMG00000041082
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7AG0006530, CQ.Regalona.r1.8AG0016570 ... CQ.Regalona.r1.8BG0017620, CQ.Regalona.r1.9BG0006460
Anacardiaceae	Pistacia vera	3	pistato.v30118520, pistato.v30119200, pistato.v30260340
Apiaceae	Apium graveolens	3	Ag5G01500, Ag8G00361, Ag9G01049
Arecaceae	Cocos nucifera	2	COCNU_03G004770, COCNU_05G008340
Arecaceae	Phoenix dactylifera	3	gene-LOC103705101, gene-LOC103709369, gene-LOC103716317
Asteraceae	Flaveria trinervia	5	Ftri14G08047, Ftri18G02628, Ftri4G08028, Ftri8G03806 ... Ftri8G07880
Brassicaceae	Arabidopsis thaliana	3	AT1G72460.1, AT3G42880.1, AT5G20690.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10002439m.g.v1.0, Thhalv10015893m.g.v1.0 ... Thhalv10019489m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp5g27540.v2.2, Sp6g23800.v2.2, SpUn0007_0040.v2.2 ... SpUn0130_0020.v2.2
Brassicaceae	Brassica nigra	6	BniB02g042180.2N, BniB03g039680.2N, BniB05g042830.2N ... BniB05g069870.2N, BniB06g025450.2N, BniB08g056490.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G0793, Ceq06G0761
Casuarinaceae	Casuarina glauca	2	Cgl02G0804, Cgl06G0783
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno05g12680
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g29850, gene.Thate01g29860
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-187, nbisL1-mrna-4607, nbisL1-mrna-5123 ... nbisL1-mrna-821
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.167, evm.TU.LG07.1343
Plantaginaceae	Plantago ovata	4	Pov_00001175, Pov_00004006, Pov_00039552, Pov_00039553
Plumbaginaceae	Limonium bicolor	1	Lb3G17954
Poaceae	Echinochloa crus-galli	3	AH04.2004, BH04.2030, CH04.2370
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_6AG0512390, gene-QOZ80_6BG0464310 ... gene-QOZ80_9AG0689880
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.4HG0360590.1
Poaceae	Lolium multiflorum	2	gene-QYE76_027471, gene-QYE76_065898
Poaceae	Oryza coarctata	3	Oco12G004560, Oco21G008610, Oco22G009840
Poaceae	Oryza sativa	4	LOC_Os03g51060.1, LOC_Os05g38010.1, LOC_Os06g09860.1 ... LOC_Os11g40550.1
Poaceae	Paspalum vaginatum	2	gene-BS78_05G213500, gene-BS78_10G074900
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0103303
Poaceae	Sporobolus alterniflorus	5	Chr07G015360, Chr11G020890, Chr14G003240, Chr21G002520 ... Chr31G007500
Poaceae	Thinopyrum elongatum	2	Tel4E01G270500, Tel7E01G330900
Poaceae	Triticum dicoccoides	4	gene_TRIDC4AG022820, gene_TRIDC4BG023360 ... gene_TRIDC7AG019970, gene_TRIDC7BG009980
Poaceae	Triticum aestivum	6	TraesCS4A02G150100.1, TraesCS4B02G149500.1 ... TraesCS4D02G150200.1, TraesCS7A02G161400.1.cds1, TraesCS7B02G066500.1.cds1, TraesCS7D02G162700.1.cds1
Poaceae	Zea mays	2	Zm00001eb166690_P001, Zm00001eb373880_P001
Poaceae	Zoysia japonica	3	nbis-gene-34969, nbis-gene-43223, nbis-gene-46097
Poaceae	Zoysia macrostachya	2	Zma_g19063, Zma_g31524
Portulacaceae	Portulaca oleracea	5	evm.TU.LG12.1606, evm.TU.LG16.1392, evm.TU.LG19.100 ... evm.TU.LG24.320, evm.TU.LG26.273
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g26930, gene.Posoc07g10310
Rhizophoraceae	Bruguiera sexangula	5	evm.TU.48811.2, evm.TU.48812.2 ... evm.TU.Scaffold_18_RagTag.780, evm.TU.Scaffold_18_RagTag.781, evm.TU.Scaffold_4_RagTag.1022
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-13898, nbisL1-mrna-27534
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-12832, nbisL1-mrna-2426, nbisL1-mrna-8402
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-1389, nbisL1-mrna-16978, nbisL1-mrna-8136
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000008l.664, evm.TU.utg000033l.417 ... evm.TU.utg000079l.4
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-2021, nbisL1-mrna-3969, nbisL1-mrna-7469
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-22840, nbisL1-mrna-8115, nbisL1-mrna-9352
Salicaceae	Populus euphratica	4	populus_peu02910, populus_peu11813, populus_peu11824 ... populus_peu33807
Solanaceae	Lycium barbarum	3	gene-LOC132633517, gene-LOC132636927, gene-LOC132640904
Solanaceae	Solanum chilense	3	SOLCI004537100, SOLCI005519000, SOLCI006560800
Solanaceae	Solanum pennellii	3	gene-LOC107006747, gene-LOC107013667, gene-LOC107020038
Tamaricaceae	Reaumuria soongarica	2	gene_2551, gene_9071
Tamaricaceae	Tamarix chinensis	1	TC10G0983
Zosteraceae	Zostera marina	3	Zosma01g39170.v3.1, Zosma02g07440.v3.1, Zosma02g17430.v3.1