halophFGD

Basic Information

Locus ID: Ag5G01496

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Oligouridylate-binding protein 1-like

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	133400271	133409692	-	Ag5G01496

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.65	44,244.13 Da	42.93	68.61	-0.41

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd12352	RRM1_TIA1_like	49	119	4.37835E-37	-
CDD	cd12354	RRM3_TIA1_like	252	326	5.58991E-34	-
CDD	cd12619	RRM2_PUB1	133	207	1.73778E-51	-
Pfam	PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	134	204	5.2E-19	IPR000504
Pfam	PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	254	320	1.6E-12	IPR000504
Pfam	PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	49	115	1.5E-13	IPR000504
SUPERFAMILY	SSF54928	RNA-binding domain, RBD	45	210	2.24E-45	IPR035979
SUPERFAMILY	SSF54928	RNA-binding domain, RBD	245	331	7.87E-22	IPR035979
Gene3D	G3DSA:3.30.70.330	-	1	130	3.4E-23	IPR012677
Gene3D	G3DSA:3.30.70.330	-	230	331	9.5E-24	IPR012677
Gene3D	G3DSA:3.30.70.330	-	131	229	1.6E-25	IPR012677
SMART	SM00360	rrm1_1	48	117	2.7E-17	IPR000504
SMART	SM00360	rrm1_1	133	206	4.7E-25	IPR000504
SMART	SM00360	rrm1_1	253	322	1.3E-17	IPR000504
ProSiteProfiles	PS50102	Eukaryotic RNA Recognition Motif (RRM) profile.	47	121	15.493864	IPR000504
ProSiteProfiles	PS50102	Eukaryotic RNA Recognition Motif (RRM) profile.	132	210	17.966896	IPR000504
ProSiteProfiles	PS50102	Eukaryotic RNA Recognition Motif (RRM) profile.	252	326	15.374476	IPR000504

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding)

KEGG Pathway

KO Term:

K13201 (nucleolysin TIA-1/TIAR)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G14100.1	RNA-binding (RRM/RBD/RNP motifs) family protein.
RefSeq	XP_017215166.1	PREDICTED: oligouridylate-binding protein 1-like isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q9M427	Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1
TrEMBL	A0A164TKX9	Oligouridylate-binding protein 1-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024768 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	47.537685	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	40.77877	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	34.428238	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	37.797119	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	39.222305	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	39.102161	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	31.070971	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	29.907055	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	73.036621	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	74.136452	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	80.840111	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	75.00164	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	67.341995	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	65.917618	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	42.899609	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	51.673153	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	50.67379	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	49.474758	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	47.951538	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	49.404724	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	50.545719	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	52.142311	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	54.860092	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	62.849796	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	51.743279	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	54.893341	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	52.866074	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	52.132771	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	57.122402	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	40.166569		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	36.852604		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	33.336617		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	66.897591		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	61.257404		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	59.553852		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	47.250801		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	46.708256		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	48.820518		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	42.953995	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	34.717747	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	29.440563	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	38.135448	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	38.711239	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	44.892151	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	41.350899	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	44.970325	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	39.082867	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	62.206165	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	56.865715	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	52.559231	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg15332, jg17991, jg25172, jg31770
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10939, gene_5582
Amaranthaceae	Atriplex hortensis	4	Ah012494, Ah015046, Ah015048, Ah028748
Amaranthaceae	Beta vulgaris	2	BVRB_7g169700, BVRB_8g190780
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg2012, Sbi_jg24705, Sbi_jg34491, Sbi_jg8567
Amaranthaceae	Salicornia europaea	2	Seu_jg20033, Seu_jg2755
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002815, GOSA_00002816, GOSA_00022700
Amaranthaceae	Suaeda glauca	5	Sgl42755, Sgl47500, Sgl47516, Sgl73441, Sgl76965
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000008121, gene:ENSEOMG00000011604 ... gene:ENSEOMG00000032587, gene:ENSEOMG00000039266, gene:ENSEOMG00000039716
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7AG0006570, CQ.Regalona.r1.8AG0016480 ... CQ.Regalona.r1.8BG0017560, CQ.Regalona.r1.9BG0006480
Anacardiaceae	Pistacia vera	4	pistato.v30118540, pistato.v30119220, pistato.v30260380 ... pistato.v30287110
Apiaceae	Apium graveolens	4	Ag4G00169, Ag4G00216, Ag5G01496, Ag8G00377
Arecaceae	Cocos nucifera	2	COCNU_13G001900, scaffold004549G000020
Arecaceae	Phoenix dactylifera	3	gene-LOC103698716, gene-LOC103702254, gene-LOC103715545
Asparagaceae	Asparagus officinalis	3	AsparagusV1_05.667.V1.1, AsparagusV1_06.382.V1.1 ... AsparagusV1_08.2658.V1.1
Asteraceae	Flaveria trinervia	5	Ftri15G14815, Ftri3G11362, Ftri4G26549, Ftri8G29013 ... FtriNA08785
Brassicaceae	Arabidopsis thaliana	3	AT1G17370.1, AT1G54080.2, AT3G14100.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10007746m.g.v1.0, Thhalv10011526m.g.v1.0 ... Thhalv10020804m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g15520.v2.2, Sp1g40520.v2.2, Sp3g12360.v2.2 ... SpUn0033_0030.v2.2
Brassicaceae	Brassica nigra	5	BniB01g051090.2N, BniB03g027460.2N, BniB04g054880.2N ... BniB07g001800.2N, BniB07g055110.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0791, Ceq04G2158, Ceq06G0757
Casuarinaceae	Casuarina glauca	3	Cgl02G0802, Cgl06G0779, CglSG0081
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g03750, gene.Cymno03g11120, gene.Cymno05g09400
Dunaliellaceae	Dunaliella salina	1	Dusal.0390s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate03g22010, gene.Thate05g04730, gene.Thate05g25870
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-3788, nbisL1-mrna-4605, nbisL1-mrna-820
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.169, evm.TU.LG07.1347
Plantaginaceae	Plantago ovata	3	Pov_00004000, Pov_00010227, Pov_00040923
Plumbaginaceae	Limonium bicolor	2	Lb3G16803, Lb3G17953
Poaceae	Echinochloa crus-galli	6	AH04.2001, AH08.2089, BH04.2029, BH08.2193, CH04.2367 ... CH08.2362
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_7AG0577050, gene-QOZ80_7BG0608410 ... gene-QOZ80_8AG0637430, gene-QOZ80_8BG0665950, gene-QOZ80_9AG0689850, gene-QOZ80_9BG0714670
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0125330.1, HORVU.MOREX.r3.4HG0364220.1 ... HORVU.MOREX.r3.7HG0681680.1
Poaceae	Lolium multiflorum	5	gene-QYE76_030074, gene-QYE76_039724, gene-QYE76_039731 ... gene-QYE76_065875, gene-QYE76_066021
Poaceae	Oryza coarctata	6	Oco13G012620, Oco14G013340, Oco15G010720, Oco16G011830 ... Oco21G008590, Oco22G009820
Poaceae	Oryza sativa	3	LOC_Os07g42380.1, LOC_Os08g40880.1, LOC_Os11g40510.1
Poaceae	Paspalum vaginatum	2	gene-BS78_05G213900, gene-BS78_07G191000
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0103294, Pt_Chr0206367, Pt_Chr0306270, Pt_Chr0306376 ... Pt_Chr0403743
Poaceae	Sporobolus alterniflorus	11	Chr07G015330, Chr16G004670, Chr16G017360, Chr16G017610 ... Chr17G004160, Chr17G016720, Chr19G002300, Chr20G001800, Chr27G014980, Chr29G002120, Chr31G007510
Poaceae	Thinopyrum elongatum	3	Tel2E01G332300, Tel4E01G241100, Tel7E01G446000
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG021440, gene_TRIDC2BG025450 ... gene_TRIDC4AG022910, gene_TRIDC4BG023790, gene_TRIDC7AG032400, gene_TRIDC7BG021950
Poaceae	Triticum aestivum	9	TraesCS2A02G169100.1, TraesCS2B02G195400.1 ... TraesCS2D02G176700.1, TraesCS4A02G150000.1, TraesCS4B02G148600.1, TraesCS4D02G150600.2, TraesCS7A02G252200.1, TraesCS7B02G138700.1, TraesCS7D02G250300.1
Poaceae	Zea mays	6	Zm00001eb035660_P002, Zm00001eb166710_P001 ... Zm00001eb174610_P001, Zm00001eb432840_P001, Zm00001eb432870_P001, Zm00001eb432880_P001
Poaceae	Zoysia japonica	3	nbis-gene-17450, nbis-gene-43159, nbis-gene-46100
Poaceae	Zoysia macrostachya	3	Zma_g18204, Zma_g19061, Zma_g24376
Portulacaceae	Portulaca oleracea	5	evm.TU.LG02.2492, evm.TU.LG12.1609, evm.TU.LG19.104 ... evm.TU.LG23.712, evm.TU.LG24.323
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g20860, gene.Posoc02g27420, gene.Posoc08g03760
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_10_RagTag.1428 ... evm.TU.Scaffold_10_RagTag.590, evm.TU.Scaffold_18_RagTag.784, evm.TU.Scaffold_4_RagTag.1026
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-13893, nbisL1-mrna-25808, nbisL1-mrna-27532 ... nbisL1-mrna-6749
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-12264, nbisL1-mrna-16111, nbisL1-mrna-2428 ... nbisL1-mrna-8406
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-1385, nbisL1-mrna-22686, nbisL1-mrna-8138
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000004l.23, evm.TU.utg000008l.668 ... evm.TU.utg000033l.420, evm.TU.utg000079l.6
Rhizophoraceae	Kandelia obovata	4	Maker00000275, Maker00004005, Maker00015029, Maker00018917
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-16489, nbisL1-mrna-2025, nbisL1-mrna-3966 ... nbisL1-mrna-7471
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-14796, nbisL1-mrna-22838, nbisL1-mrna-8112 ... nbisL1-mrna-9356
Salicaceae	Populus euphratica	7	populus_peu02912, populus_peu04532, populus_peu04551 ... populus_peu11809, populus_peu13115, populus_peu33809, populus_peu37342
Solanaceae	Lycium barbarum	4	gene-LOC132619231, gene-LOC132633514, gene-LOC132636931 ... gene-LOC132645290
Solanaceae	Solanum chilense	4	SOLCI001632700, SOLCI004247100, SOLCI005327100 ... SOLCI006560600
Solanaceae	Solanum pennellii	4	gene-LOC107005345, gene-LOC107014842, gene-LOC107023548 ... gene-LOC107026105
Tamaricaceae	Reaumuria soongarica	2	STRG.12436_chr02_+, gene_534
Tamaricaceae	Tamarix chinensis	2	TC05G0499, TC10G0975
Zosteraceae	Zostera marina	2	Zosma03g25420.v3.1, Zosma06g17400.v3.1