halophFGD

Basic Information

Locus ID: Ag5G01419

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Serine threonine-protein kinase-like protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	121505187	121507680	-	Ag5G01419

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.00	58,969.00 Da	38.59	81.91	-0.06

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00069	Protein kinase domain	368	443	1.8E-9	IPR000719
SUPERFAMILY	SSF50985	RCC1/BLIP-II	60	307	3.01E-20	IPR009091
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	348	441	4.63E-19	IPR011009
Gene3D	G3DSA:2.130.10.30	-	18	189	2.1E-8	IPR009091
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	331	444	9.4E-31	-
Gene3D	G3DSA:2.130.10.30	-	190	330	2.8E-11	IPR009091
SMART	SM00219	tyrkin_6	367	521	3.7E-4	IPR020635
ProSiteProfiles	PS50011	Protein kinase domain profile.	367	545	12.810365	IPR000719
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	373	395	-	IPR017441
MobiDBLite	mobidb-lite	consensus disorder prediction	309	343	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	309	348	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004713 (protein tyrosine kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04730 (interleukin-1 receptor-associated kinase 1 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G55950.1	CRINKLY4 related 3.
RefSeq	XP_017216098.1	PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Daucus carota subsp. sativus]
Swiss-Prot	Q9LY50	Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana OX=3702 GN=CCR3 PE=2 SV=1
TrEMBL	A0A161ZKP6	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024823 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	2.28229	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	2.341799	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	2.31447	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.618288	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	3.971	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.345624	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.565652	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.251204	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	14.550761	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	14.497656	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	18.236717	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	17.3948	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	11.837784	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	10.951309	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	2.404263	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	2.960917	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	3.425285	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	6.423919	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	4.445031	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	4.399159	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	5.19142	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.78325	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	3.239465	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	3.241441	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	2.593145	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	5.634777	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	4.157782	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	2.938431	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	3.688051	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.749232		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.85796		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.689366		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.931614		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	3.882317		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	1.370718		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.832245		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.423037		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.39061		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	10.707653	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	8.00912	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	2.369074	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	3.612914	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	3.152157	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	2.595697	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	1.885071	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	4.180602	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	3.166659	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	4.797207	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	4.53864	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	4.953483	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10023, jg12207, jg23254, jg2588
Aizoaceae	Mesembryanthemum crystallinum	3	gene_17004, gene_23475, gene_6899
Amaranthaceae	Atriplex hortensis	3	Ah022744, Ah027833, Ah035323
Amaranthaceae	Beta vulgaris	3	BVRB_1g001690, BVRB_2g023720, BVRB_7g172030
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg1563, Sbi_jg21430, Sbi_jg22423, Sbi_jg3770 ... Sbi_jg49020
Amaranthaceae	Salicornia europaea	3	Seu_jg16305, Seu_jg3184, Seu_jg6216
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00000702, GOSA_00003374, GOSA_00016456
Amaranthaceae	Suaeda glauca	6	Sgl10775, Sgl16128, Sgl62858, Sgl67472, Sgl72799, Sgl76338
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000007879, gene:ENSEOMG00000013560 ... gene:ENSEOMG00000020002, gene:ENSEOMG00000021010, gene:ENSEOMG00000033136, gene:ENSEOMG00000049979, gene:ENSEOMG00000051562
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.1AG0001380, CQ.Regalona.r1.1BG0019860 ... CQ.Regalona.r1.2AG0021610, CQ.Regalona.r1.2BG0027210, CQ.Regalona.r1.7AG0004400, CQ.Regalona.r1.9BG0001240
Anacardiaceae	Pistacia vera	4	pistato.v30061400, pistato.v30064990, pistato.v30167920 ... pistato.v30176990
Apiaceae	Apium graveolens	3	Ag10G01283, Ag3G01870, Ag5G01419
Arecaceae	Cocos nucifera	6	COCNU_01G021170, COCNU_02G011550, COCNU_04G014090 ... COCNU_15G003840, COCNU_15G003850, COCNU_16G006680
Arecaceae	Phoenix dactylifera	5	gene-LOC103706681, gene-LOC103709609, gene-LOC108511633 ... gene-LOC113462997, gene-LOC120113038
Asparagaceae	Asparagus officinalis	2	AsparagusV1_07.460.V1.1, AsparagusV1_09.307.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G10352, Ftri6G19092, Ftri9G01045
Brassicaceae	Arabidopsis thaliana	2	AT3G55950.1, AT5G47850.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10003696m.g.v1.0, Thhalv10005797m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g18350.v2.2, Sp5g06580.v2.2
Brassicaceae	Brassica nigra	2	BniB07g037030.2N, BniB08g070500.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq02G0127, Ceq02G0131, Ceq04G2521, Ceq08G1872
Casuarinaceae	Casuarina glauca	4	Cgl02G0134, Cgl02G0140, Cgl04G2744, Cgl08G1928
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno03g00080, gene.Cymno04g16440, gene.Cymno08g06650
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g16890, gene.Thate05g08730, gene.Thate07g12730
Malvaceae	Hibiscus hamabo Siebold & Zucc.	5	nbisL1-mrna-1837, nbisL1-mrna-2341, nbisL1-mrna-3649 ... nbisL1-mrna-3944, nbisL1-mrna-9915
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG02.1874, evm.TU.LG05.1183, evm.TU.LG06.1126 ... evm.TU.LG09.1086
Plantaginaceae	Plantago ovata	2	Pov_00037656, Pov_00040508
Plumbaginaceae	Limonium bicolor	1	Lb5G27806
Poaceae	Echinochloa crus-galli	5	AH08.74, BH01.1996, BH01.4294, CH05.1031, CH06.2108
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_4AG0316790, gene-QOZ80_4BG0348020 ... gene-QOZ80_5AG0406610, gene-QOZ80_5BG0454630, gene-QOZ80_9AG0678680, gene-QOZ80_9BG0702390
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0015720.1.CDS1 ... HORVU.MOREX.r3.2HG0170030.1.CDS1, HORVU.MOREX.r3.4HG0345140.1.CDS1, HORVU.MOREX.r3.7HG0706130.1.CDS1
Poaceae	Lolium multiflorum	3	gene-QYE76_009245, gene-QYE76_033260, gene-QYE76_064272
Poaceae	Oryza coarctata	9	Oco02G030470, Oco07G006440, Oco08G006410, Oco09G001370 ... Oco10G001420, Oco15G000450, Oco16G000590, Oco21G003340, Oco22G004130
Poaceae	Oryza sativa	6	LOC_Os03g30050.1, LOC_Os04g35890.1, LOC_Os05g03620.1 ... LOC_Os08g01830.1, LOC_Os10g26000.1, LOC_Os11g11490.1
Poaceae	Paspalum vaginatum	5	gene-BS78_05G131000, gene-BS78_06G103300, gene-BS78_K176600 ... gene-BS78_07G011200, gene-BS78_09G027800
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0402680, Pt_Chr0500235
Poaceae	Sporobolus alterniflorus	15	Chr01G028130, Chr07G018770, Chr07G019610, Chr16G000070 ... Chr16G011120, Chr17G000030, Chr18G001970, Chr20G013640, Chr22G015990, Chr23G012570, Chr25G007230, Chr26G006950, Chr29G012830, Chr30G007130, Chr31G003200
Poaceae	Thinopyrum elongatum	4	Tel1E01G144200, Tel2E01G542900, Tel4E01G174300 ... Tel7E01G552400
Poaceae	Triticum dicoccoides	9	gene_TRIDC1AG009730, gene_TRIDC1BG012550 ... gene_TRIDC2AG044810, gene_TRIDC2BG047460, gene_TRIDC4AG032620, gene_TRIDC4AG048590, gene_TRIDC4BG016900, gene_TRIDC7AG045120, gene_TRIDC7BG036920
Poaceae	Triticum aestivum	12	TraesCS1A02G070600.1.cds1, TraesCS1B02G089100.1.cds1 ... TraesCS1D02G073100.1.cds1, TraesCS2A02G308400.1.cds1, TraesCS2B02G324900.1.cds1, TraesCS2D02G306700.1.cds1, TraesCS4A02G205100.1.cds1, TraesCS4B02G108900.1.cds1, TraesCS4D02G106000.1.cds1, TraesCS7A02G321600.1.cds1, TraesCS7B02G222500.1.cds1, TraesCS7D02G318600.2
Poaceae	Zea mays	9	Zm00001eb029850_P001, Zm00001eb082270_P001 ... Zm00001eb090890_P001, Zm00001eb169230_P001, Zm00001eb174160_P001, Zm00001eb260420_P001, Zm00001eb265200_P001, Zm00001eb354950_P001, Zm00001eb415550_P001
Poaceae	Zoysia japonica	7	nbis-gene-18291, nbis-gene-37799, nbis-gene-41403 ... nbis-gene-48164, nbis-gene-50186, nbis-gene-51939, nbis-gene-7627
Poaceae	Zoysia macrostachya	7	Zma_g17760, Zma_g19737, Zma_g21319, Zma_g22355, Zma_g23502 ... Zma_g26351, Zma_g27629
Portulacaceae	Portulaca oleracea	6	evm.TU.LG04.2070, evm.TU.LG05.165, evm.TU.LG06.244 ... evm.TU.LG19.1360, evm.TU.LG24.1358, evm.TU.LG25.1150
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g36460, gene.Posoc02g03070, gene.Posoc05g17650
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_11_RagTag.320, evm.TU.Scaffold_12_RagTag.122 ... evm.TU.Scaffold_8_RagTag.498
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-14096, nbisL1-mrna-24675, nbisL1-mrna-9763
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-11649, nbisL1-mrna-15474, nbisL1-mrna-2229
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-14246, nbisL1-mrna-18081, nbisL1-mrna-19432
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000005l.80, add.evm.TU.utg000018l.257 ... add.evm.TU.utg000027l.232
Rhizophoraceae	Kandelia obovata	1	Maker00002929
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-16934, nbisL1-mrna-18920, nbisL1-mrna-20553
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-11655, nbisL1-mrna-18669, nbisL1-mrna-18894
Salicaceae	Populus euphratica	7	populus_peu01986, populus_peu06550, populus_peu16538 ... populus_peu16546, populus_peu18975, populus_peu18976, populus_peu20431
Solanaceae	Lycium barbarum	4	gene-LOC132608995, gene-LOC132620190, gene-LOC132626969 ... gene-LOC132640396
Solanaceae	Solanum chilense	3	SOLCI002006100, SOLCI003176000, SOLCI003808600
Solanaceae	Solanum pennellii	3	gene-LOC107003249, gene-LOC107018600, gene-LOC107021177
Tamaricaceae	Reaumuria soongarica	5	STRG.21546_chr08_-, gene_15123, gene_15817, gene_3005 ... gene_9805
Tamaricaceae	Tamarix chinensis	3	TC05G1807, TC09G2413, TC11G1204
Zosteraceae	Zostera marina	3	Zosma01g17430.v3.1, Zosma01g18430.v3.1, Zosma04g14500.v3.1