Basic Information
Locus ID:
Ag5G01344
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein of unknown function (DUF2921)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 110789445 | 110792490 | - | Ag5G01344 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.24 | 105,260.54 Da | 37.57 | 95.19 | -0.03 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21700.1 | Protein of unknown function (DUF2921). | 0 |
| RefSeq | XP_017219588.1 | PREDICTED: uncharacterized protein LOC108196696 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A161Z825 | Fibrocystin-L OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024906 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 11.26448 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.658037 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.702208 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 11.881969 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.662331 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.981538 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.331049 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 10.796556 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.698794 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 10.582768 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.158708 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 14.241813 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.682663 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 10.935588 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.80399 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 14.677513 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 13.412291 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.567479 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.57438 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 15.360336 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.815531 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.007789 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.983605 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.868847 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.558973 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.689764 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.471004 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 10.666359 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.367748 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.433369 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.386223 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.585966 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 6.019203 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 7.797194 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.283084 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.976028 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.37007 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.629481 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.170362 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.736338 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.983369 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 14.394013 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.834185 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 15.061908 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.07364 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 15.581112 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 17.353462 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.669767 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.721288 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 7.445389 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg19469, jg20292, jg24455 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22241 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018033 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g183160 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg26089, Sbi_jg9935, Sbi_jg9936 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18793 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017041 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl45929, Sgl50628 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009924, gene:ENSEOMG00000035751 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0005300, CQ.Regalona.r1.8BG0005420 |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30161050, pistato.v30161060, pistato.v30161070 ... |
| Apiaceae | Apium graveolens | 3 | Ag3G00372, Ag3G00373, Ag5G01344 |
| Arecaceae | Cocos nucifera | 6 | COCNU_03G011630, COCNU_03G011640, COCNU_03G011650 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103700269, gene-LOC103702591, gene-LOC103702592 |
| Asparagaceae | Asparagus officinalis | 5 | AsparagusV1_01.1348.V1.1, AsparagusV1_01.1358.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G16730, Ftri15G30267 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G21700.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024323m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g19830.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g015450.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq01G1029, Ceq03G2516, Ceq09G1822 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1200 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g05970 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g17900 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9198 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.954 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00005626, Pov_00027089, Pov_00031351, Pov_00038641 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G33730 |
| Poaceae | Echinochloa crus-galli | 12 | AH02.2740, AH02.2742, AH02.2743, AH02.2744, AH02.2746 ... |
| Poaceae | Eleusine coracana subsp. coracana | 12 | gene-QOZ80_1AG0028500, gene-QOZ80_1AG0028510 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0086010.1.CDS1 ... |
| Poaceae | Oryza coarctata | 6 | Oco01G017200, Oco02G017420, Oco02G017430, Oco02G017440 ... |
| Poaceae | Oryza sativa | 5 | LOC_Os01g48610.1, LOC_Os01g48620.1, LOC_Os01g48640.1 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_03G230400, gene-BS78_03G230500 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0305968 |
| Poaceae | Sporobolus alterniflorus | 9 | Chr01G015420, Chr03G013430, Chr03G013440, Chr08G013600 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel1E01G634100, Tel1E01G634300, Tel3E01G445300 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG057030, gene_TRIDC1BG065590 ... |
| Poaceae | Triticum aestivum | 17 | TraesCS1A02G387900.1.cds1, TraesCS1B02G415400.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb156820_P001, Zm00001eb156830_P001 ... |
| Poaceae | Zoysia japonica | 9 | nbis-gene-13708, nbis-gene-26082, nbis-gene-26083 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g10868, Zma_g10869, Zma_g27356 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.49, evm.TU.LG04.701 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g10750 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_14_RagTag.474, evm.TU.Scaffold_14_RagTag.482 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-17881, nbisL1-mrna-17883 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3820 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8260 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000007l.62 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-23306 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10627 |
| Salicaceae | Populus euphratica | 2 | populus_peu18183, populus_peu33989 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621068 |
| Solanaceae | Solanum chilense | 1 | SOLCI004349000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008698 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.22312_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2119 |