Basic Information
Locus ID:
Ag5G01310
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
MMT
Description:
Methionine
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 104480797 | 104489399 | + | Ag5G01310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 120,909.47 Da | 34.01 | 92.25 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02440 | AdoMet_MTases | 125 | 181 | 1.42657E-4 | - |
| Pfam | PF00155 | Aminotransferase class I and II | 803 | 1075 | 1.1E-11 | IPR004839 |
| Pfam | PF05175 | Methyltransferase small domain | 122 | 181 | 5.3E-7 | IPR007848 |
| SUPERFAMILY | SSF53383 | PLP-dependent transferases | 697 | 1081 | 1.99E-27 | IPR015424 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 74 | 306 | 1.82E-18 | IPR029063 |
| SUPERFAMILY | SSF53383 | PLP-dependent transferases | 413 | 473 | 1.18E-5 | IPR015424 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 87 | 311 | 6.9E-17 | - |
| Gene3D | G3DSA:3.90.1150.10 | Aspartate Aminotransferase, domain 1 | 703 | 1075 | 2.9E-16 | IPR015422 |
| Gene3D | G3DSA:3.40.640.10 | - | 732 | 960 | 2.9E-16 | IPR015421 |
| ProSiteProfiles | PS51555 | Methionine S-methyltransferase (EC 2.1.1.12) family profile. | 4 | 1087 | 623.929565 | IPR025779 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49810.1 | methionine S-methyltransferase. Arabidopsis thaliana methionine S-methyltransferase, an enzyme that catalyzes S -methylmethionine formation. | 0 |
| RefSeq | XP_017229557.1 | PREDICTED: methionine S-methyltransferase [Daucus carota subsp. sativus] | 0 |
| Q9SWR3 | Methionine S-methyltransferase OS=Wollastonia biflora OX=101473 GN=MMT1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A162B290 | methionine S-methyltransferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001729 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 13.106412 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 13.504163 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.006245 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.364854 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 13.74742 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.217435 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.651092 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.177248 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 22.493906 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 23.231407 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.278614 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 23.64394 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 24.235439 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.63319 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 17.425243 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 22.421947 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 16.405994 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 30.819107 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 22.901741 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 34.194763 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 41.668236 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 16.028111 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 16.104696 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 21.973932 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 20.25215 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 36.151714 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 22.095404 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 23.299957 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 23.190731 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 8.833014 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 15.408754 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 13.669167 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 11.260285 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.383927 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 11.588274 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 8.938327 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 3.836754 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 6.66564 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.92837 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 34.731873 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 31.056601 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 13.843717 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 15.576366 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.000509 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.463218 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 21.140713 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 8.169463 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 14.141159 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.505886 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 14.154376 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg26456 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17656 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012358 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g145640 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42184, Sbi_jg44741 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27352 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002173, GOSA_00002174 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl31754, Sgl31755, Sgl37039, Sgl37040 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000102, gene:ENSEOMG00000001463 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0009840, CQ.Regalona.r1.6BG0011160 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30104840 |
| Apiaceae | Apium graveolens | 1 | Ag5G01310 |
| Arecaceae | Cocos nucifera | 1 | scaffold004319G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103720822 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2692.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G26876 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G49810.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028379m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g11200.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g060880.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G2284 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G2489 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g02600 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g14890 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.1061 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001860 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G04805, Lb1G04837, Lb1G04838 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.671, BH05.725, CH05.828 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0408700, gene-QOZ80_5BG0457110 |
| Poaceae | Hordeum vulgare | 4 | HORVU.MOREX.r3.1HG0002510.2, HORVU.MOREX.r3.3HG0318130.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_003318, gene-QYE76_008511, gene-QYE76_061175 ... |
| Poaceae | Oryza coarctata | 2 | Oco09G000230, Oco10G000310 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g01470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G004800 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0105381, Pt_Chr0105463, Pt_Chr0105464, Pt_Chr0501050 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G003090, Chr22G016970 |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G031300, Tel5E01G683900, Tel7E01G097800 |
| Poaceae | Triticum dicoccoides | 11 | gene_TRIDC1AG001430, gene_TRIDC1BG002220 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS1A02G013800.4, TraesCS1B02G017800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb356170_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-18416 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27526 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.299, evm.TU.LG26.746 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g05670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1537 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6640 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9517 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18927 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.395 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005912 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2827 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21875 |
| Salicaceae | Populus euphratica | 1 | populus_peu08202 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598588 |
| Solanaceae | Solanum chilense | 1 | SOLCI001251500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107006489 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2392 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0758 |
| Zosteraceae | Zostera marina | 1 | Zosma01g33920.v3.1 |