Basic Information
Locus ID:
Ag5G01301
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
ERD3
Description:
Methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 103525176 | 103528936 | + | Ag5G01301 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 69,003.67 Da | 48.10 | 74.13 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03141 | Putative S-adenosyl-L-methionine-dependent methyltransferase | 82 | 589 | 3.3E-213 | IPR004159 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 430 | 569 | 4.48E-8 | IPR029063 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 116 | 325 | 1.97E-28 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 171 | 354 | 8.4E-13 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19120.1 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein. | 0 |
| RefSeq | XP_017216146.1 | PREDICTED: probable methyltransferase PMT21 [Daucus carota subsp. sativus] | 0 |
| Q94II3 | Probable methyltransferase PMT21 OS=Arabidopsis thaliana OX=3702 GN=ERD3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7B1P0 | Methyltransferase OS=Davidia involucrata OX=16924 GN=Din_032331 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.719313 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.176634 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.227423 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.158668 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.112835 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.033516 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.968515 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.395305 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 27.104458 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 25.583378 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 30.237856 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 19.721575 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.890808 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 17.761988 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 109.279251 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 104.492249 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 81.026283 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 40.320038 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 33.903175 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 25.467039 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 28.361971 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 50.837788 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 56.099621 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 48.446266 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 49.736195 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 33.64587 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 44.960518 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 28.524544 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 38.882065 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.480441 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.99573 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.949608 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.714468 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 11.559773 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.545991 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.353415 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.699618 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.636702 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.601409 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.649898 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.987189 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.727133 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.218701 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 9.835529 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.649122 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 2.526093 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 11.420263 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 40.62429 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 41.738155 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 44.515858 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg23625, jg36970, jg4685 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15083 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004425 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g107510 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg23803, Sbi_jg7631 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12385 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010941 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51199, Sgl56500 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005738, gene:ENSEOMG00000020781 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0001340, CQ.Regalona.r1.5BG0001470 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30020580 |
| Apiaceae | Apium graveolens | 3 | Ag5G01301, Ag6G00864, Ag7G00573 |
| Arecaceae | Cocos nucifera | 3 | COCNU_07G015440, COCNU_08G005780, COCNU_10G009890 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103714510, gene-LOC103716660, gene-LOC120108005 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1005.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri13G09545, Ftri14G05655, Ftri14G30515, Ftri3G29040 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G31850.1, AT4G19120.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007126m.g.v1.0, Thhalv10024718m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g27560.v2.2, Sp7g17820.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g071550.2N, BniB03g035040.2N, BniB04g047680.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0590 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G0677, Cgl01G0732 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g08830, gene.Cymno03g08140 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g23020, gene.Thate09g04130 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11425 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.932 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028546 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08432, Lb2G12012 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.2743, BH01.3075, CH01.3298 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0118670, gene-QOZ80_2BG0172420 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0054020.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013001 |
| Poaceae | Oryza coarctata | 2 | Oco19G011330, Oco20G011200 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g14150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G269500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503446, Pt_Chr0503492 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G006600, Chr13G018140 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G343200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG030150, gene_TRIDC1BG035640 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G198600.1, TraesCS1B02G213600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb025460_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38213 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15786 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG04.2951, evm.TU.LG10.624, evm.TU.LG17.636 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g20000 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.716, evm.TU.Scaffold_16_RagTag.674 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17681 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18529, nbisL1-mrna-7596 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-17053, nbisL1-mrna-19079 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000007l.12, evm.TU.utg000022l.167 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015988, Maker00016187 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15829, nbisL1-mrna-175 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10430, nbisL1-mrna-9039 |
| Salicaceae | Populus euphratica | 4 | populus_peu03289, populus_peu03290, populus_peu34135 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609651, gene-LOC132635418 |
| Solanaceae | Solanum chilense | 2 | SOLCI003666000, SOLCI004086600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107028442, gene-LOC107028867 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.16091_chr06_+, STRG.23621_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G4650, TC09G0535 |
| Zosteraceae | Zostera marina | 3 | Zosma01g12850.v3.1, Zosma02g02400.v3.1, Zosma04g16650.v3.1 |