Basic Information
Locus ID:
Ag5G01290
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
COBW domain-containing protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 101724544 | 101732007 | + | Ag5G01290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 46,074.73 Da | 44.51 | 97.13 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03112 | CobW-like | 65 | 267 | 1.65293E-96 | - |
| Pfam | PF07683 | Cobalamin synthesis protein cobW C-terminal domain | 319 | 413 | 6.1E-22 | IPR011629 |
| Pfam | PF02492 | CobW/HypB/UreG, nucleotide-binding domain | 65 | 250 | 1.4E-56 | IPR003495 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 64 | 279 | 5.6E-37 | IPR027417 |
| SUPERFAMILY | SSF90002 | Hypothetical protein YjiA, C-terminal domain | 319 | 413 | 4.05E-25 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 62 | 269 | 3.6E-72 | IPR027417 |
| Gene3D | G3DSA:3.30.1220.10 | - | 298 | 413 | 1.4E-37 | IPR036627 |
| SMART | SM00833 | CobW_C_3 | 319 | 413 | 6.0E-10 | IPR011629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 314 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80480.1 | plastid transcriptionally active 17. | 0 |
| RefSeq | XP_031098839.1 | uncharacterized protein LOC116002812 [Ipomoea triloba] | 0 |
| Q9BRT8 | Zinc-regulated GTPase metalloprotein activator 1A OS=Homo sapiens OX=9606 GN=ZNG1A PE=1 SV=1 | 0 | |
| TrEMBL | A0A164TQR5 | CobW C-terminal domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024946 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 16.945166 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.37614 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.626394 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.358939 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.96351 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.316045 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.534164 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.457851 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.256459 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 16.149603 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 18.187368 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 18.446512 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.244737 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 15.964307 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.322603 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.676643 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.194762 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.719179 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.817037 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.828241 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 7.709169 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 8.030137 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.850826 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.078018 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.254805 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 5.746292 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.052548 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.52303 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 6.900472 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 15.827388 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.227973 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 11.752075 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 18.460583 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 18.10985 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 20.887037 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 10.321185 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 11.870986 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 12.420022 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 3.608568 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.013141 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.179974 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 14.838896 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.383228 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.504526 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 5.888607 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 17.756866 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.513245 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 23.639713 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 20.507055 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 23.26025 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18265, jg4695 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_15102, gene_21416 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004442, Ah010449 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g107790, BVRB_9g219160 |
| Amaranthaceae | Salicornia bigelovii | 9 | Sbi_jg11616, Sbi_jg18388, Sbi_jg20623, Sbi_jg23822 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12370, Seu_jg20866 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005136, GOSA_00010956 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl51177, Sgl56358, Sgl56481, Sgl61889 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000004224, gene:ENSEOMG00000016287 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0001220, CQ.Regalona.r1.5BG0001320 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30129130, pistato.v30245640 |
| Apiaceae | Apium graveolens | 2 | Ag5G01290, Ag9G01186 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G017960, scaffold014295G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103697578, gene-LOC103715886, gene-LOC120107156 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.1025.V1.1, AsparagusV1_08.1613.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G02611, Ftri1G25061 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G15730.1, AT1G80480.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10007622m.g.v1.0, Thhalv10018560m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g14020.v2.2, Sp5g35320.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g075760.2N, BniB06g041060.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0135, Ceq02G0350 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G0120, Cgl02G0365 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g03500, gene.Cymno16g05010 |
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0089s00003.v1.0, Dusal.0167s00001.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g07150, gene.Thate07g12260 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-3275 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.767, evm.TU.LG05.911 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003808, Pov_00034545 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G12025, Lb3G20697, Lb4G21946 |
| Poaceae | Echinochloa crus-galli | 5 | AH07.3810, AH09.2177, BH07.3631, BH09.2349, CH07.3704 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0149310, gene-QOZ80_2BG0204860 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0193910.1, HORVU.MOREX.r3.6HG0625860.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_026524, gene-QYE76_046087, gene-QYE76_063378 |
| Poaceae | Oryza coarctata | 4 | Oco03G024470, Oco04G024940, Oco07G014890, Oco08G014380 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g55630.1, LOC_Os04g51100.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G308500, gene-BS78_06G215100 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0206193, Pt_Chr0206223, Pt_Chr0301452, Pt_Chr0301492 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr09G017440, Chr0G009250, Chr0G013060, Chr13G001630 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G751100, Tel6E01G654200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG063220, gene_TRIDC2BG067190 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G439900.1, TraesCS2B02G461500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb258070_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-22749, nbis-gene-8406, nbis-gene-8407 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14637, Zma_g20369 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1279, evm.TU.LG10.587, evm.TU.LG11.624 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g04460, gene.Posoc09g01110 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.46188.3, evm.TU.Scaffold_14_RagTag.752 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-17712, nbisL1-mrna-7253, nbisL1-mrna-7272 |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-11477, nbisL1-mrna-16605, nbisL1-mrna-17590 ... |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-17093, nbisL1-mrna-7804, nbisL1-mrna-7820 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000025l.1, evm.TU.utg000023l.226 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00012178, Maker00012378, Maker00018802 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15849 |
| Rhizophoraceae | Rhizophora mangle | 6 | nbisL1-mrna-19469, nbisL1-mrna-22207, nbisL1-mrna-22222 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu02596, populus_peu03271, populus_peu33478 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132633069, gene-LOC132635389 |
| Solanaceae | Solanum chilense | 2 | SOLCI004308500, SOLCI007513200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014866, gene-LOC107026914 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19276_chr07_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G2268, TC09G1030 |
| Zosteraceae | Zostera marina | 2 | Zosma01g32480.v3.1, Zosma05g00130.v3.1 |