Basic Information
Locus ID:
Ag5G01246
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Pentatricopeptide repeat-containing protein At4g38150-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 91328280 | 91330274 | + | Ag5G01246 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.29 | 36,924.08 Da | 47.02 | 76.27 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 197 | 245 | 9.9E-14 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 271 | 298 | 0.8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 169 | 194 | 4.9E-6 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 134 | 317 | 1.1E-35 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 201 | 234 | 2.5E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 169 | 197 | 4.0E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 235 | 268 | 5.2E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 233 | 267 | 10.161182 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 198 | 232 | 12.232868 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 163 | 197 | 9.13082 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 82 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38150.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_017216457.1 | PREDICTED: pentatricopeptide repeat-containing protein At4g38150 [Daucus carota subsp. sativus] | 0 |
| Q9SZL5 | Pentatricopeptide repeat-containing protein At4g38150 OS=Arabidopsis thaliana OX=3702 GN=At4g38150 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164TSK6 | PPR_long domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025005 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.139264 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.455264 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.042848 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.140145 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.486258 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.211261 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 6.289641 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 5.097305 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 12.685704 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 10.816007 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 11.545203 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 13.769079 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 11.96044 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.416632 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 7.039532 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.856563 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.056692 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.601923 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.108269 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 10.693259 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.019389 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.740682 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 12.206217 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 9.380098 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 11.569918 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.848694 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 11.800375 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.729596 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.743135 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 10.360579 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 12.727237 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 12.373232 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 8.363968 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.103096 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 10.1273 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.200532 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.671666 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.208558 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.724758 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 6.147636 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.656498 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 10.908563 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 7.928473 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 11.10508 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 10.513438 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.033954 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 9.008368 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.148711 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.43019 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 16.358328 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg4634 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21781 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009897 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g216010 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11177, Sbi_jg46154 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20493 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005459 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55718, Sgl60932 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000015747, gene:ENSEOMG00000037551 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0004800, CQ.Regalona.r1.9AG0019810 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30272880 |
| Apiaceae | Apium graveolens | 1 | Ag5G01246 |
| Arecaceae | Cocos nucifera | 2 | COCNU_08G004190, COCNU_11G001230 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103711876, gene-LOC103713879, gene-LOC120107506 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1597.V1.1, AsparagusV1_05.1578.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri2G15492 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G38150.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005467m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g37600.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g063710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G1915 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G2086 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g06900 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g07350 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.473 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00012559, Pov_00035570 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G21673 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.1978, CH02.2203, CH04.2307, CH06.2086 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0020310, gene-QOZ80_1BG0070210 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0266740.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053210 |
| Poaceae | Oryza coarctata | 2 | Oco01G012240, Oco02G012380 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g36600.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G166500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602966 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G007850, Chr02G018110, Chr03G008680, Chr05G015850 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G354000, Tel5E01G083000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG029500, gene_TRIDC3BG032800 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G201400.1.cds1, TraesCS3B02G225500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb342190_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10205, nbis-gene-53087 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8025 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.882, evm.TU.LG22.1044 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g11980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1658 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19879 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4864 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13583 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000002l.29 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-22076 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12351 |
| Salicaceae | Populus euphratica | 3 | populus_peu08387, populus_peu36957, populus_peu37432 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604250 |
| Solanaceae | Solanum chilense | 1 | SOLCI004441600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005402 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7897 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0297, TC12G0891 |
| Zosteraceae | Zostera marina | 1 | Zosma05g18840.v3.1 |