Basic Information
Locus ID:
Ag5G01219
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the ALG6 ALG8 glucosyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 89306976 | 89311494 | + | Ag5G01219 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 60,786.42 Da | 30.50 | 114.91 | 0.64 |
Protein Domain:
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44660.1 | ALG6, ALG8 glycosyltransferase family. | 0 |
| RefSeq | XP_017215498.1 | PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Daucus carota subsp. sativus] | 0 |
| O80505 | Dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase OS=Arabidopsis thaliana OX=3702 GN=At2g44660 PE=2 SV=3 | 0 | |
| TrEMBL | A0A161Y6G5 | Alpha-1,3-glucosyltransferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025030 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.604192 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.392466 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.613276 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.243077 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.305696 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 8.483997 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.346887 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.661611 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 16.083408 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.271142 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.604647 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 16.277834 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.015186 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.576611 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 8.565514 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 7.335351 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.41082 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.801275 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 7.132463 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 8.658051 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 10.497014 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.328209 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 17.795841 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 10.677197 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 12.411056 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.415869 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.223634 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 8.709361 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 9.980267 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.511972 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 7.273378 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 5.926157 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 17.408434 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 14.350016 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 13.654948 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 10.844608 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.99545 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 7.14368 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 10.610005 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 8.328416 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.666986 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 13.699718 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 13.926396 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.231468 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 18.33296 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.496323 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 18.778418 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.123559 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.523656 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 13.587737 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg29754, jg29756 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1277 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023350 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29105, Sbi_jg3319 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6614 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000128 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl11458, Sgl16835, Sgl16851 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000015471, gene:ENSEOMG00000035572 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0007800, CQ.Regalona.r1.2BG0021730 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30001250 |
| Apiaceae | Apium graveolens | 1 | Ag5G01219 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G004430 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710756 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1258.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G02883 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G44660.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001410m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g26740.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g032090.2N, BniB06g003070.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1010 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1019 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g04290 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0782s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g08840 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1156 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00032438 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb0G37632 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3043, BH07.2869, CH07.2948 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0141390, gene-QOZ80_2BG0196990 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0605090.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_024504, gene-QYE76_024563 |
| Poaceae | Oryza coarctata | 2 | Oco03G018500, Oco04G019250 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g46320.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G234900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203780, Pt_Chr0203796 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G004840, Chr15G006350 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G486300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG040230, gene_TRIDC6BG047190 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G262300.1, TraesCS6B02G289600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb251030_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22225, nbis-gene-9100 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14158 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.656, evm.TU.LG24.644 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g05940 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.231 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21952 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2799 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18603 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.668 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009367 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6781 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12575 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645840 |
| Solanaceae | Solanum chilense | 1 | SOLCI001873500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011146 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3566 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0509 |
| Zosteraceae | Zostera marina | 1 | Zosma06g05630.v3.1 |