Basic Information
Locus ID:
Ag5G01210
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 88777067 | 88783470 | + | Ag5G01210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 81,993.44 Da | 28.17 | 92.69 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12854 | PPR repeat | 635 | 662 | 1.3E-5 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 319 | 350 | 7.2E-8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 499 | 526 | 0.069 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 253 | 297 | 2.7E-12 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 530 | 579 | 1.8E-7 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 388 | 416 | 5.6E-7 | IPR002885 |
| SUPERFAMILY | SSF48452 | TPR-like | 497 | 663 | 9.21E-7 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 98 | 245 | 2.2E-22 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 317 | 385 | 7.2E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 386 | 460 | 5.4E-10 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 462 | 598 | 7.6E-22 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 246 | 316 | 5.8E-17 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 599 | 669 | 2.2E-9 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 395 | 427 | 2.3E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 290 | 323 | 4.6E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 325 | 357 | 4.4E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 254 | 288 | 4.3E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 569 | 591 | 0.0032 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 531 | 565 | 9.086975 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 252 | 286 | 12.474017 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 287 | 321 | 10.764054 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 637 | 671 | 9.339086 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 357 | 391 | 8.900633 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 496 | 530 | 10.040608 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 392 | 426 | 10.435215 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 322 | 356 | 10.435215 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20740.1 | Pentatricopeptide repeat (PPR-like) superfamily protein. | 0 |
| RefSeq | XP_017215178.1 | PREDICTED: pentatricopeptide repeat-containing protein At4g20740 [Daucus carota subsp. sativus] | 0 |
| Q9SVH3 | Pentatricopeptide repeat-containing protein At4g20740 OS=Arabidopsis thaliana OX=3702 GN=At4g20740 PE=3 SV=1 | 0 | |
| TrEMBL | A0A161X6C6 | PPR_long domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_025034 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 9.097979 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.937369 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.967784 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 4.464458 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.119111 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.892219 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.651687 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.65079 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.099807 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.47148 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 9.105678 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 9.044361 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.084737 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.676222 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.350405 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.149474 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.11134 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.922876 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.173906 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.129238 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.990216 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.079903 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.818316 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.968703 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.676533 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 3.929979 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.005917 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.275937 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.730934 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.055305 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.898853 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.03559 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.719266 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.553865 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.484431 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.109843 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.655584 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.952334 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.548768 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.273098 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.412293 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.647587 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.443962 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.395885 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.727034 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.450374 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.34582 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.674238 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.606463 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.316183 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg2369, jg2373 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17205 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g040990 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg29904, Sbi_jg29905, Sbi_jg43369, Sbi_jg43370 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg18523, Seu_jg18524 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004285 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66321, Sgl70657 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000013307, gene:ENSEOMG00000051003 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0003600, CQ.Regalona.r1.2BG0006310 |
| Apiaceae | Apium graveolens | 1 | Ag5G01210 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G002600 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714692 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.89.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri6G00337, Ftri6G17960 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G20740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024515m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g18820.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g016200.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G2121, Ceq06G1687 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1749 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g04610 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g26850 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-12188, nbisL1-mrna-2588 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.119 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039321 |
| Poaceae | Echinochloa crus-galli | 2 | BH03.468, CH03.547 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0558050, gene-QOZ80_7BG0589130 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0149600.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_042827 |
| Poaceae | Oryza coarctata | 3 | Oco13G002550, Oco13G002560, Oco14G002780 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g08180.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G054200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0303683 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G000390, Chr28G001890 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G455500, Tel5E01G412200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG018200, gene_TRIDC2BG022000 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G145600.1.cds1, TraesCS2B02G170600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb301300_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-26826 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6087 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1053, evm.TU.LG25.261 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g09860 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1436 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8520 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5640 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15230 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.72 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002980 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20522 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18806 |
| Salicaceae | Populus euphratica | 1 | populus_peu35114 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644839 |
| Solanaceae | Solanum chilense | 1 | SOLCI004749700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008583 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13284 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0706 |
| Zosteraceae | Zostera marina | 1 | Zosma03g15050.v3.1 |